BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24510.1
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472896 jgi|Araly1|472896|fgenesh2_kg.1__2850__AT1G24510.1 2940 0.0
Ahg475880 jgi|Araly1|475880|fgenesh2_kg.2__1010__AT1G67760.1 436 2e-121
> Ahg472896 jgi|Araly1|472896|fgenesh2_kg.1__2850__AT1G24510.1
Length=1804
Score = 2940 bits (1592), Expect = 0.0
Identities = 1740/1811 (96%), Gaps = 11/1811 (1%)
Strand=Plus/Plus
Query 1 AAATCTTCCAGACATTCTTCTTCTCGCTTTTTTCCCCATTTCAACttttttttttCCTCT 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 AAATCTTCCAGACATTCTTCTTCTCGTTTTTTTCCCCATTTCTACTTTTTTTTTTCCTCT 60
Query 61 CCAGTGCACTAGGAAACaaaaaaaaCCCAAGATCTATAGTTCGATCGGATCGAG-AGAAG 119
| |||| | |||| | |||||||||||||||||| |||||||||||||||||| || ||
Sbjct 61 CTAGTGTAGTAGG--A-AAAAAAAACCCAAGATCTGTAGTTCGATCGGATCGAGAAG-AG 116
Query 120 CTCGAAAATGGCGCTGGCGTTCGATGAGTTCGGGCGTCCGTTCATTATACTGAGAGAGCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 117 CTCGAAAATGGCGCTGGCGTTCGATGAGTTCGGGCGTCCGTTCATTATACTAAGAGAGCA 176
Query 180 AGATCAAAAGACTCGTCTTAGAGGAATCGATGCTCAGAAAGCCAATATCGCCGCTGGTAA 239
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 177 AGATCAAAAGACGCGTCTTAGAGGAATCGATGCTCAGAAAGCCAATATCGCCGCCGGGAA 236
Query 240 AGCCGTGGCTCGGATCCTTCGATCCTCTCTTGGACCCAAAGGAATGGATAAGATGCTTCA 299
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 237 AGCCGTGGCTCGGATCCTTCGATCTTCTCTTGGACCCAAAGGAATGGACAAGATGCTTCA 296
Query 300 AGGACCTGACGGAGACATCACCATCACAAACGATGGTGCTACGATATTGGAGCAAATGGA 359
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 297 AGGACCTGACGGAGACATCACCATCACAAACGATGGTGCTACCATCTTGGAGCAAATGGA 356
Query 360 TGTTGACAACCAGATTGCGAAACTAATGGTGGAACTGTCGCGGAGTCAGGATTATGAAAT 419
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 TGTTGACAACCAGATTGCTAAACTTATGGTGGAACTGTCGCGGAGTCAGGATTATGAAAT 416
Query 420 TGGTGATGGAACAACAGGTGTTGTTGTTATGGCTGGTGCACTTCTTGAGCAAGCTGAACG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 TGGTGATGGAACAACAGGTGTTGTTGTTATGGCTGGTGCACTTCTGGAGCAAGCTGAACG 476
Query 480 TCAGTTAGATAGAGGAATTCATCCCATTCGTATTGCTGAAGGATATGAGATGGCTTCTAG 539
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 477 TCAGTTAGATAGAGGAATTCATCCCATCCGTATTGCTGAAGGGTATGAGATGGCTTCTAG 536
Query 540 GGTGGCTGTTGAGCATTTGGAGCGTATTGCCCAAAAGTTTGAATTCGATGTTAATAATTA 599
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 537 GGTGGCTGTTGACCATTTGGAGCGTATTGCTCAAAAGTTTGAATTCGACGTTAATAATT- 595
Query 600 T-GAGCCTCTGGTTCAGACTTGCATGACTACTCTGTCCTCGAAGATTGTGAATCGATGCA 658
| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 596 TCGAGCCCCTGGTTCAGACATGCATGACTACTCTCTCCTCTAAGATTGTGAATCGATGCA 655
Query 659 AGCGCAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTGTTGCTGATTTAGAGAGGA 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGCGTAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTGTTGCTGATTTAGAGAGGA 715
Query 719 GGGATGTTAACTTAGATCTGATCAAAGTAGAGGGGAAAGTTGGGGGAAAGTTGGAGGACA 778
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 GGGATGTTAATTTAGATCTGATCAAAGTAGAAGGGAAAGTTGGGGGAAAGTTGGAGGACA 775
Query 779 CTGAGCTTATTTATGGAATACTGATTGACAAAGATATGAGTCATCCGCAAATGCCAAAGC 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 CTGAGCTTATTTATGGAATACTGATTGACAAAGACATGAGTCATCCGCAAATGCCAAAGC 835
Query 839 AGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTTTGAGCCACCGAAGCCGAAGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTTTGAGCCACCGAAGCCGAAGA 895
Query 899 CTAAGCATAAGGTGGACATTGATACAGTGGAAAAGTTTGAGACATTGCGCAAGCAAGAGC 958
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 896 CTAAGCATAAGGTGGACATTGACACAGTGGAGAAGTTTGAGACATTGCGCAAGCAAGAGC 955
Query 959 AGCAATATTTCGATGAGATGGTACAAAAGTGCAAGGATGTTGGTGCTACGCTGGTTATTT 1018
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 956 AGCAATATTTCGATGAGATGGTTCAAAAGTGCAAGGATGTTGGTGCTACACTGGTTATTT 1015
Query 1019 GCCAATGGGGATTCGATGATGAGGCAAACCATCTATTGATGCACAGGAATTTGCCTGCTG 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCCAATGGGGATTTGATGATGAGGCAAACCATCTATTGATGCACAGGAATTTGCCTGCTG 1075
Query 1079 TCAGATGGGTAGGGGGTGTTGAATTAGAACTTATCGCAATAGCCACAGGCGGTAGAATTG 1138
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 TCAGATGGGTCGGGGGTGTTGAATTAGAACTTATTGCAATAGCCACAGGCGGTAGAATTG 1135
Query 1139 TTCCAAGATTCCAGGAGTTGACCCCAGAGAAGTTAGGGAAGGCTGGCGTGGTTCGTGAGA 1198
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1136 TTCCAAGATTCCAGGAGTTGACTCCAGAGAAGTTAGGCAAGGCTGGCGTGGTTCGTGAGA 1195
Query 1199 AATCTTTTGGCACAACAAAAGAACGAATGCTGTATATTGAGCACTGTGCGAACTCAAAAG 1258
|||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1196 AATCATTTGGCACTACAAAAGAACGAATGCTGTATATTGAGCACTGTGCGAATTCGAAAG 1255
Query 1259 CTGTCACTGTTTTCATCCGTGGAGGTAACAAAATGATGATAGAAGAGACGAAACGTAGTA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 CTGTCACTGTTTTCATCCGTGGAGGTAACAAAATGATGATAGAAGAGACGAAGCGTAGTA 1315
Query 1319 TCCACGATGCTCTGTGTGTGGCTAGGAATCTCATCCGCAACAAATCAATTGTTTATGGAG 1378
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1316 TCCACGATGCCCTGTGTGTGGCTAGGAATCTAATCCGCAACAAATCAATTGTATATGGAG 1375
Query 1379 GTGGGGCAGCTGAAATCGCTTGCTCACTTGCGGTTGATGCAGCTGCTGATAAATACCCTG 1438
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1376 GTGGTGCAGCTGAAATCGCTTGCTCCCTTGCGGTTGATGCAGCTGCTGATAAATACCCTG 1435
Query 1439 GCGTGGAGCAGTATGCAATTAGGGCGTTTGCAGAAGCTTTGGACTCTGTCCCTATGGCTC 1498
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GCGTTGAGCAGTATGCAATTAGGGCGTTTGCAGAAGCTTTGGACTCTGTCCCTATGGCTC 1495
Query 1499 TTGCAGAGAACAGTGGATTACAGCCCATTGAGACACTCTCTGCGGTTAAATCTCAGCAAA 1558
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTGCAGAGAACAGTGGATTGCAGCCCATTGAGACACTCTCTGCGGTTAAATCTCAGCAAA 1555
Query 1559 TTAAGGAGAATATTCCCTTCTATGGAATAGATTGCAATGACGTGGGAACAAACGATATGA 1618
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 TTAAGGAGAATATTCCCTTCTATGGGATAGATTGCAATGACGTGGGAACAAACGATATGA 1615
Query 1619 GGGAGCAAAATGTGTTTGAAACATTGATCGGGAAACAGCAACAAATTTTGCTAGCTACGC 1678
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1616 GGGAGCAAAATGTGTTTGAAACATTGATTGGGAAACAGCAGCAAATTTTGCTAGCTACGC 1675
Query 1679 AAGTCGTTAAGATGATTCTAAAGATCGACGATGTCATCTCCAATTCTGAATACTGATTTG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1676 AAGTCGTTAAGATGATTCTAAAGATCGACGATGTCATCTCCAATTCTGAATACTGATGTG 1735
Query 1739 TTGCTACCTTTGTCCTAAC-CTTTGGCTTCTTCGGTGTTTTTT-GTTTGCTTTCTATTAG 1796
||||||||| ||| ||| |||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1736 TTGCTACCTCTGTA--AACTCTTTGGCTTCTTGGGTGTTTTTTAGTTTGCTTTCTGTTAG 1793
Query 1797 CTTTTGATACC 1807
|||||| ||||
Sbjct 1794 CTTTTGGTACC 1804
> Ahg475880 jgi|Araly1|475880|fgenesh2_kg.2__1010__AT1G67760.1
Length=1006
Score = 436 bits (236), Expect = 2e-121
Identities = 318/357 (89%), Gaps = 7/357 (2%)
Strand=Plus/Plus
Query 641 AGATTGTGAATCGATGCAAGCGCAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTG 700
||| ||||||||||||||||||||| ||||||||||||||||| || | |||||||||||
Sbjct 266 AGACTGTGAATCGATGCAAGCGCAG-TTAGCTGAGATTGCTGTGAAGGTGGTTCTTGCTG 324
Query 701 TTGCTGATTTAGAGAGGAGGGATGTTAACTTAGATCTGATCAAAG-TAGAGGGGAAAGTT 759
|||||||||||||||||| ||||||||| || |||||||| |||| |||| || ||||||
Sbjct 325 TTGCTGATTTAGAGAGGAAGGATGTTAATTTGGATCTGAT-AAAGGTAGAAGGAAAAGTT 383
Query 760 GGGGGAAAG-TTGGAGGACACTGAGCTTATTTATGGAATACTGATTGACAAAGATATGAG 818
||||| ||| ||| ||| | |||||||||| ||||| || |||| |||||||| |||||
Sbjct 384 GGGGGTAAGCTTG-AGGGCCCTGAGCTTATATATGGGATTTTGATCGACAAAGACATGAG 442
Query 819 TCATCCGCAAATGCCAAAGCAGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTT 878
|||||||||||||||||||| |||| |||||| |||||||| ||||||||||| |||||
Sbjct 443 CCATCCGCAAATGCCAAAGCAAATTGCAGATGCTCACATTGCTATTTTGACTTG-CCCTT 501
Query 879 T-GAGCCACCGAAGCCGAAGACTAAGCATAAGGTGGACATTGATACAGTGGAAAAGTTTG 937
| ||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 502 TTGAGCCACCGAAACCAAAGACAAAGCATAAGGTGGACATTGATACAGTGGAGAAGTTTG 561
Query 938 AGACATTGCGCAAGCAAGAGCAGCAATATTTCGATGAGATGGTACAAAAGTGCAAGG 994
|||| |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||
Sbjct 562 AGACTTTGCGCAAGCAAGAACAGGAATATTTTGATGAGATGGTTCAAAAGTGCAAGG 618
Score = 206 bits (111), Expect = 7e-52
Identities = 143/158 (91%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 160 TTCATTATACTGAGAGAGCAAGATCAAAAGACTCGTCTTAGAGGA-ATCGATGCTCAGAA 218
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||
Sbjct 114 TTCATTATACTGAGAGAGCAAGATCAAAAGACTCGTCGTA-AGGGCATCGATGCTCA-AA 171
Query 219 AG-CCAATATCGCCGCTGGTAAAGCCGTGGCTCGGATCCTTCGATCCTCTCTTGGACCCA 277
|| |||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 172 AGGCCAACATTGCCGCTGGTAAAGCCGTGGCTCGGATCCTCCGTTCCTCTCTTGGTCCCA 231
Query 278 AAGGAATGGATAAGATGCTTCAAGGACCTGACGGAGAC 315
| || ||||| || ||||||||||||||||||||||||
Sbjct 232 AGGGCATGGAAAAAATGCTTCAAGGACCTGACGGAGAC 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5