BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24520.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921734 jgi|Araly1|921734|scaffold_103015.1                        604    2e-172


> Ahg921734 jgi|Araly1|921734|scaffold_103015.1
Length=401

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 379/404 (94%), Gaps = 4/404 (1%)
 Strand=Plus/Plus

Query  50   GTAAGAAGGAGAGAGAGAAGAATGGGTCGCCAAAACATTGTCGTCGTGGTTGCCCTCGTC  109
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  1    GTAAGAAGGAGAGAGAGAAGAATGGGTCGCCAAAACGTTGTCATCGTGGTTGCCCTCGTC  60

Query  110  TTCATGGCCATCATTGGCCTTGCCGCAGCTGCCTCCTCTCCATCTCCTTCAGCGTCTCCC  169
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCATGGCCATCATTGGCCTCGCCGCAGCTGCCTCCTCTCCATCTCCTTCAGCGTCTCCC  120

Query  170  TCCAAAGCTCCAGCTGCCTCCAAAACCGATCATGTCGAGGCTCCAGTCACCGATGACCAA  229
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  121  TCCAAAGCTCCTGCTGCCTCCAAAACCGATCAGGTCGAAGCTCCAGTCACCGATGACCAA  180

Query  230  ATCGGAACCACCGATGACGATGCAGCTCCTACTCCTGGTGACGGTGACGTTGCAGTGGCT  289
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct  181  ATCGGAACCACCGATGACGATGCAGCTCCCACTCCTGGTGATGGTGACGTTGCAGTGGCC  240

Query  290  GGTCCTCTAGGAAGTGACTCCTCGTACGACAATGCGCC-TACAGGCTCTGCTGATTCTGC  348
            ||||||||||||||||||||||| |||| |||||| || | |||||||||| ||||||||
Sbjct  241  GGTCCTCTAGGAAGTGACTCCTCCTACGCCAATGCACCCT-CAGGCTCTGCCGATTCTGC  299

Query  349  CAAAAGCGGTGCGGCAGCTCTTGGCGTCTCTGCGGTCGTCGTTGGTGTTACATCCATTGC  408
              | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  300  TGACAGCGGTGCGGCAGCTCTTGGCGTCTCTGCTGTCGTCGTTGGTGTTACATCCATTGC  359

Query  409  TGGTTCTTTCTTGTTACTCTAAGTTGGGCATTGTTTTATGATAA  452
             ||||||||||||||| |||||| |||| ||||||  |||||||
Sbjct  360  CGGTTCTTTCTTGTTATTCTAAGGTGGGTATTGTT--ATGATAA  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5