BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24530.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921733 jgi|Araly1|921733|scaffold_103014.1 2073 0.0
> Ahg921733 jgi|Araly1|921733|scaffold_103014.1
Length=1297
Score = 2073 bits (1122), Expect = 0.0
Identities = 1240/1298 (96%), Gaps = 3/1298 (0%)
Strand=Plus/Plus
Query 40 TTACCAAACATCGAAACCACCATGAGGGTTATCTCAAAACTGTTCGATTCCGACAGAAGA 99
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 3 TTACCAAACATCG-AA--ACCATGAGGGTTATCTCAAAGCTGTTCGATTCCGACAGAAGA 59
Query 100 CGAATACCCAAATCGCCGAAGCATTTGGATTCCGGCGAAAGCGCCACGTCATCTTCCTCA 159
|||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||| |||
Sbjct 60 CGAACACCGAAATCGCCGAAGCATTTGGATTCCGACGAAAGCTTCACGTTATCTTCATCA 119
Query 160 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTTCATAGCAGTCTCTCTCTCCAAACGCTT 219
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 120 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTCCATAGCAGTCTCTCTCTCCAGACGCTT 179
Query 220 CCTTCAGTTCCCTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 279
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCTTCAGTTCCTTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 239
Query 280 ACCTCCTCGTTTAAACTCCGTGAACGGAGTCTTCCTGTAACTTGTCTCGCCGTCAATGGT 339
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 240 ACCTCCTCGTTTAAACTCCGTGAACGAAGTCTTCCTGTAACTTGTCTCGCCGTCAACGGT 299
Query 340 GGTTACCTCTTCGCCGTGTCTGGACACGAAGTAAGTATCTACGATCGCGACATGTGTGCT 399
|| || ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 300 GGCTATCTCTTTGCCGTTTCTGGACATGAAGTTAGTATCTACGATCGCGACATGTGTGCT 359
Query 400 CATCTCGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTGAAGTCCGTCGGCTTC 459
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CATCTAGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTTAAGTCCGTCGGCTTC 419
Query 460 TCCGGTGAGAAAATCTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTTACG 519
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 TCCGGTGAGAAAATTTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTAACG 479
Query 520 GCGAAAAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCGAAGAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 539
Query 580 TTCGCTCTTCCTAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 639
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGCTCTTCCCAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 599
Query 640 CATGCTGACGCCGTTACTGCTCTCGCCGTTAGTGACGGATTCATTTACTCTGTTTCTTGG 699
||||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||
Sbjct 600 CATGCTGACGCCGTTACTGCTCTTGCCGTTAATAACGGATTTATTTACTCTGTTTCTTGG 659
Query 700 GATAAGACTTTGAAGATATGGAGAGCCTCCGATCTTCGTTGCAAAGAATCAATCAAAGCT 759
|||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 660 GATAAGACCTTGAAGATATGGAGAGCCTCTGATCTTCGTTGCAAAGAGTCAATCAAAGCA 719
Query 760 CACGATGACGCCGTTAATGCCATTGCCGTTTCTACTAACGGCACCGTTTACACTGGATCC 819
||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 720 CACGATGACGCCGTTAATGCCGTCGCCGTCTCTACTAACGGCACCGTTTATACTGGATCC 779
Query 820 GCGGATAGACGTATCCGGGTTTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTT 879
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCAGATAGACGTATCCGGGTGTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTC 839
Query 880 GCGACTTTAGAGAAGCACAAATCGGCGGTTAACGCATTAGCATTAAACGACGACGGATCG 939
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 GCGACTTTGGAAAAGCATAAATCGGCGGTTAACGCATTGGCATTAAACGACGACGGATCG 899
Query 940 GTTTTGTTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAGGATACTTCC 999
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 900 GTTTTATTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAAGACACTTCC 959
Query 1000 AATTACATGGCGGTGAGAGGTGCGTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1059
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AATTACATGGCGGTGAGAGGTGCTTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1019
Query 1060 AACGTCTCTGATTTGCTACTCAGTGGATCAGCTGATCGGACGGTCAGGATTTGGCGACGT 1119
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 AACGTCTCTGATTTGCTACTAAGTGGATCAGCTGATCGGACGGTCAGAATTTGGCGACGT 1079
Query 1120 GGACCCGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACCAAGCCGGTTAAG 1179
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 GGACCGGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACGAAGCCGGTTAAG 1139
Query 1180 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCATTAGTGGAAGT 1239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCGTTAGTGGAAGT 1199
Query 1240 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1259
Query 1300 ACGAATCTCGTTCAATAAATTAGTGGCATTAATTTGTT 1337
|||||||||||||||||||||| ||| |||||||||||
Sbjct 1260 ACGAATCTCGTTCAATAAATTAATGGGATTAATTTGTT 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5