BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24540.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472893 jgi|Araly1|472893|fgenesh2_kg.1__2847__AT1G24540.1 2521 0.0
> Ahg472893 jgi|Araly1|472893|fgenesh2_kg.1__2847__AT1G24540.1
Length=1587
Score = 2521 bits (1365), Expect = 0.0
Identities = 1514/1588 (95%), Gaps = 2/1588 (0%)
Strand=Plus/Plus
Query 1 ATGAACGTGTTGATTTCTGCGGTGGTATGGGTATACACTCACTTAAGGTTATCAGACGTA 60
||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 1 ATGAACGTGTTGATTTCTGCGGTAGTATGGGTATACACTCATTTGAGGTTATCGGACGTG 60
Query 61 GCTTTAGCCCTAGTAGGGCTTTTTCTTCTTAGTTACTTGCGTGAGAAGTTAGTGAGCAAA 120
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 GCTTTAGCTCTAGTAGGGCTTTTTCTTCTAAGTTACTTGCGTGAAAAGTTAGTGAGCAAA 120
Query 121 GGTGGGCCAGTGATGTGGCCAGTGTTGGGAATCATACCGATGTTGGCGCTAAACAAACAC 180
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 GGTGGGCCAGTGATGTGGCCAGTGTTGGGAATCATACCGATGTTAGCCCTAAACAAACAC 180
Query 181 GATCTGTTTACTTGGTGCACCAGATGCGTGGTCAGATCTGGTGGGACGTTTCATTACCGA 240
||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||| ||
Sbjct 181 GATCTGTTTGGTTGGTGCACCAGAGGCGTGGTCAGAGCTGGTGGGACTTTTCATTACAGA 240
Query 241 GGAATTTGGTTCGGTGGGGCTTACGGAATCATGACCGCAGATCCTGCAAACGTCGAGCAC 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGAATTTGGTTCGGTGGGTCTTACGGAATCATGACCGCAGATCCTGCAAACGTCGAACAC 300
Query 301 ATTCTCAAAACCAATTTCAAGAACTATCCAAAGGGTGCGTTTTATAGAGAGAGGTTTCGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCTCAAAACCAATTTCAAGAACTATCCAAAGGGTGCGTTTTATAGAGAGAGGTTTCGT 360
Query 361 GATCTTCTTGAAGATGGGATCTTTAACGCTGATGATGAGCTTTGGAAAGAAGAGAGACGC 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 GATCTTCTTGAAGATGGGATCTTTAACGCTGATGATGAGCTTTGGAAGGAAGAGAGACGT 420
Query 421 GTGGCTAAAACCGAGATGCATTCTTCTCGTTTCTTGGAGCACACGTTTACTACGATGAGA 480
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GTGGCTAAAACCGAGATGCACTCTTCTCGTTTCTTGGATCACACGTTTACTACGATGAGA 480
Query 481 GATCTGGTGGACCAGAAGCTGGTGCCGCTGATGGAGAACTTGTCTACTTCTAAGAGAGTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCTGGTGGACCAGAAGCTGGTGCCGCTGATGGAGAACTTGTCTACTTCTAAGAGAGTC 540
Query 541 TTTGATCTACAAGATTTGCTCCTGCGTTTTACCTTTGATAACATATGTATATCGGCCTTT 600
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TTTGATCTACAAGATTTTCTCCTGCGTTTTACCTTTGATAACATATGTATCTCGGCCTTT 600
Query 601 GGTGTTTACCCAGGATCGTTAGAGACAGGTTTACCGGAGATTCCTTTCGCTAAGGCTTTT 660
||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 601 GGTGTCTATCCAGGATCGTTAGAGACCGATTTACCGGAGATTCCTTTCGCTAAGGCTTTT 660
Query 661 GAGGACGCCACGGAGTATACACTTGCAAGGTTTCTGATACCTCCTTTTGTGTGGAAGCCA 720
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 GAGGAAGCTACGGAGTATACACTTGCAAGGTTTCTGGTACCTCCTTTTGTGTGGAAGCCA 720
Query 721 ATGAGGTTTCTAGGGATTGGGTATGAAAGAAAGCTGAATAATGCAGTTAGAATAGTTCAC 780
||||||||| |||||||||||||||| ||||||||||| || || |||||||| ||||||
Sbjct 721 ATGAGGTTTTTAGGGATTGGGTATGAGAGAAAGCTGAAGAAAGCGGTTAGAATCGTTCAC 780
Query 781 GCGTTTGCGAATAAGACAGTGAGAGAGAGGAGGAACAAGATGAGGAAACTCGGGAACTTG 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCGTTTGCTAATAAGACAGTGAGAGAGAGGAGGAACAAGATGAGGAAACTCGGGAACTTG 840
Query 841 AACGATTACGCTGATCTCTTGTCACGCCTTATGCAGAGAGAGTACGAGAAAGAAGAAGAT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 AACGATTACGCTGATCTCTTGTCACGCCTTATGCAGAGAGAGTACGAGAAAGAAGAAGGT 900
Query 901 ACCACTAGAGGAAACTACTTTTCTGACAAGTACTTCAGAGAGTTCTGCACAAGTTTCATA 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 ACCACTAGAGGAAACTACTTTTCAGACAAGTACTTCAGAGAGTTCTGCACAAGTTTCATA 960
Query 961 ATCGCGGGTCGAGACACTACATCAGTGGCCCTCGT-GTGGTTCTTCTGGCTAGTTCAGAA 1019
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 961 ATCGCGGGCCGAGACACTACATCAGTGGCCCTC-TCGTGGTTCTTCTGGCTAGTTCAGAA 1019
Query 1020 ACATCCTGAAGTCGAGAAGAGAATCCTAAGAGAAATCAGAGAGATTAAAAGGAAACTTAC 1079
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1020 ACATCCTGAAGTCGAGAAGAGAATCCTAAGCGAAATCAGAGAGATTAAAGGGAAACTTAC 1079
Query 1080 AACACAAGAAACTGAAGATCAGTTTGAGGCTGAAGATTTCAGGGAAATGGTGTATCTGCA 1139
|||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 AACACAAGAAACCGAGGATCAGTTTGAGGCTGAAGAGCTCAGGGAAATGGTGTATCTGCA 1139
Query 1140 AGCTGCTTTAACAGAGTCACTGAGGCTATACCCTTCCGTGCCAATGGAGATGAAACAAGC 1199
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1140 AGCTGCTTTAACAGAGTCACTGAGGCTTTACCCTTCGGTGCCAATGGAGATGAAACAAGC 1199
Query 1200 TTTAGAAGACGATGTGTTACCCGATGGGACAAGGGTGAAGAAAGGCGCTAGGATTCACTA 1259
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTTAGAAGATGATGTGTTGCCCGATGGGACAAGGGTGAAGAAAGGCGCTAGGATTCACTA 1259
Query 1260 CTCAGTCTACTCTATGGGGAGAATAGAATCAATTTGGGGAAAAGACTGGGAAGAGTTCAA 1319
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1260 CTCGGTCTACTCGATGGGGAGAATAGAATCGATTTGGGGAAAAGACTGGGAAGACTTCAA 1319
Query 1320 ACCAGAGAGATGGATCAAAGAAGGAAGAATTGTGAGCGAAGATCAGTTCAAGTATGTAGT 1379
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct 1320 ACCAGAGAGATGGATCAAAAAAGGAAGAATTGTGAGCGGAGATCAGTTCAAGTATGTTGT 1379
Query 1380 GTTCAACGGAGGTCCAAGGCTGTGTGTTGGGAAGAAGTTTGCGTATACACAAATGAAAAT 1439
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1380 GTTCAACGGAGGTCCAAGGCTGTGTGTTGGGAAGAATTTTGCGTATACACAGATGAAAAT 1439
Query 1440 GGTGGCTGCAGCGATCTTGATGAGGTATTCAGTAAAAGTCGTCCAAGGACAAGAGATTGT 1499
|||||||||||| ||||||||||||||||| || | ||| ||||| ||||||||||||||
Sbjct 1440 GGTGGCTGCAGCAATCTTGATGAGGTATTCGGTTAGAGTTGTCCACGGACAAGAGATTGT 1499
Query 1500 TCCCAAACTCACCACCACATTGTACATGAAGAACGGTATGAATGTTATGCTCCAGCCTCG 1559
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1500 TCCCAAGCTCACCACCACATTGTACATGAAGAACGGTATGCGTGTTATGCTCCAGCCCCG 1559
Query 1560 TGACTGGTAAGGTAGTTCGGTTTAAAAA 1587
|||||||||||||||||||||| ||||
Sbjct 1560 CGACTGGTAAGGTAGTTCGGTTTGAAAA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5