BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24570.1 Length=1244 Score E Sequences producing significant alignments: (Bits) Value Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204 1707 0.0 Ahg926055 jgi|Araly1|926055|scaffold_201616.1 693 0.0 Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 267 2e-70 > Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204 Length=1092 Score = 1707 bits (924), Expect = 0.0 Identities = 1038/1094 (95%), Gaps = 4/1094 (0%) Strand=Plus/Plus Query 55 ATGAAGCTTTTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTGTTATTGGACTATCT 114 ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1 ATGAAGCTTCTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTCTTGTTGGACTATCT 60 Query 115 TTTCCATCTTTATGGATCACTGAGACAAGTCTCCCGAGAAACCTTCTTCGCTCCATTGCT 174 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 61 TTTCCATCTTTATGGATCACTGAGACGAGTCTCCCCAGAAACCTTCTTCGCTCCATTGCT 120 Query 175 ATCTCACTTAGAGATTCCGGAATTGCAACTCCTCACAAAGCCATTGATATCTCAAAGGCA 234 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct 121 ATCTCACTTAGAGATTCAGGAATTGCAACTCCTCCCAAGGCCATTGATATCTCAAAGGCA 180 Query 235 TGCGCTGAGAGATTACCATCCGGTATCATTGCATCCGAATCGGACTTGTACTTGCGCAGA 294 |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| Sbjct 181 TGCGCTGAGAGATTACCACCCGGTATTATTGCATCCGAATCGGACTTGTATTTGCGCAGA 240 Query 295 TTATGGGGGAACCCTGATGAGGATTTAG-TGAAACAACCGAGATATCTAGCAACATTTAC 353 |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 241 TTATGGGGGAACCCTGATGAGGATTT-GAAGAAGCAACCGAGATATCTAGCAACATTTAC 299 Query 354 AGTGGGTTATAATCAGAGACACAATATAGATGCGTGTGTTAGCAAGTTTTCAGAGAACTT 413 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 300 AGTGGGTTATAATCAGAGACACAATATAGATGCTTGTGTTAACAAGTTTTCAGACAACTT 359 Query 414 TACTATTGTTCTGTTTCATTATGATGGCG-TAACAAGTGCATGGAATGATGAGTTTGAGT 472 ||| ||||||||||||||||| ||||| | |||||||||| ||||| ||||||||||||| Sbjct 360 TACAATTGTTCTGTTTCATTACGATGG-GATAACAAGTGCGTGGAACGATGAGTTTGAGT 418 Query 473 GGTCGAGGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 532 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGTCGAAGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 478 Query 533 GATTCTTGCACCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAGGATC 592 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 479 GATTCTTGCATCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAAGATC 538 Query 593 TTGGAGTTGATCACTTTAATGCAGAAGAATACATACACATAGTGAAGAAGCACGACCTTG 652 ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| ||||| Sbjct 539 TTGGAGTCGATCACTTTAACGCAGAAGAATACATACACATGGTGAAGAAGCACGGCCTTG 598 Query 653 AGATTTCGCAGCCTGGTTTGGACCCAGAGACTGGGTTTAATTGGCAGATCACCAAAAGAA 712 |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 599 AGATTTCGCAGCCTGGTTTGGACCCAGAGAGAGGGTTTAACTGGCAGATCACCAAAAGAA 658 Query 713 GAGAACATAGTGAAGTCCACAAGGAGACAGATGAGAAACTCGACTGGTGCTCTAATCCTC 772 ||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| Sbjct 659 GAGAACATAGTGAAGTCCATAAGGAAACAGATGAAAAACTCGACTGGTGCTCTCATCCTC 718 Query 773 CCCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCAT 832 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 719 CTCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCGT 778 Query 833 GGCGCTGCGTGTGGCATATGATCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTG 892 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 779 GGCGCTGCGTCTGGCACATGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTG 838 Query 893 CACTGAGAAGATGTGTTGAGGAGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGT 952 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 839 CACTCAGAAGATGTGTTGAGGAGCCTGCATTTGAGAATATAGGAATAGTAGACTCACAGT 898 Query 953 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGGAAAGCAGATAACGGGAAAG 1012 |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct 899 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGAAAAGAAGATAATGGGAAAG 958 Query 1013 CACCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1072 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CGCCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1018 Query 1073 TGGAAGCCGCGGAAAAGGATTATTTCAGATCGTTACAAGTTGAAAGCCCATCCAATTCAA 1132 | || |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| Sbjct 1019 TAGATGCCGCGGAAAAGGATTATTTCAAATCATTACAAGTCGAAAGCCCATCCAATTCAA 1078 Query 1133 CAACTTCTCATTAG 1146 |||| ||||| ||| Sbjct 1079 CAACCTCTCAATAG 1092 > Ahg926055 jgi|Araly1|926055|scaffold_201616.1 Length=1259 Score = 693 bits (375), Expect = 0.0 Identities = 726/888 (82%), Gaps = 54/888 (6%) Strand=Plus/Plus Query 271 GAATCGGACTTGTACTTGCGCAGATTATGGGGG-AACCCTG-ATGAGGATTTAG-TGAAA 327 ||||| ||||| || |||||||||||||||||| | || | | |||||||| | | Sbjct 367 GAATCAGACTTCTATTTGCGCAGATTATGGGGGTTA-CC-GCAGGAGGATTT-GACCAGT 423 Query 328 CAACCGAGATATCTAGCAACATTTACAGTGGGTTA-TAATCAGAGA-CACAATATAGATG 385 |||| ||||| || ||||| ||||||||||| || |||||||| | || ||||| |||| Sbjct 424 GAACCAAGATACCTCGCAACGTTTACAGTGGG-TATTAATCAGAAAGCA-AATATTGATG 481 Query 386 CGTGTGT-TAGCAAGTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTATGATGGCGTA 444 | ||||| || ||||||||||| ||||| |||||||| |||||||| ||||| | || Sbjct 482 CTTGTGTCAAG-AAGTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGA-CG-GT- 537 Query 445 ACAAGTGCATGGAAT--GATGAGTTTGAGTGGTCGAGGAATGCAATACACATAAGTGT-C 501 ||||| | || | ||||||||||| ||||||| || ||| |||||||| || || | Sbjct 538 -CAAGT-AACCGAGTGGGATGAGTTTGAATGGTCGAAGACTGCTATACACATTAGCGTGC 595 Query 502 AAAAAGCAGACAAAATGGTGGTATGCAAAGAGATTCTTGCACCCGGACATTGTAGCACGA 561 |||||||||||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct 596 -GAAAGCAGACAAAATGGTGGTATGCAAAGAGGTTTTTGCACCCTGATATTGTAGCACGA 654 Query 562 TACGATTATATATTCATATGGGATGAGGATCTTGGAGTTGATCACTTTAATGCAGAAGAA 621 || |||||||| ||||| |||||||| || ||||| || || || |||||||||||||| Sbjct 655 TATGATTATATCTTCATCTGGGATGAAGACCTTGGGGTCGAGCATTTTAATGCAGAAGAG 714 Query 622 TACATACACATAGTGAAGAAGCACGACCTTGAGATTTCGCAGCCTGGTTTGGACCCAGAG 681 |||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||| | Sbjct 715 TACATAAAGATGGTGAAGAAGCATGGCCTGGAGATTTCCCAACCTGGCTTGGAACCA-A- 772 Query 682 ACT-GGGTTTAAT-TGGCAGATCACCAAA-AGAAGAGAACATAGTG-AAGTCCACAAGGA 737 || ||| |||| |||||||| || ||| ||| ||| | ||| || ||||||||||| | Sbjct 773 ACCAGGGATTAACGTGGCAGATGAC-AAAGAGACGAGGAGATA-TGGAAGTCCACAAG-A 829 Query 738 GA-CAGATGAGAA-AC-TCGACTGGTGCTCTA-ATCCTCCCCGGCCTCCATGTGCTGCAT 793 | |||| || || || | || |||||||| | |||||| | |||||||||||||||| Sbjct 830 TAACAGAAGA-AAGACCTGGA-TGGTGCTC-AGATCCTCATCTCCCTCCATGTGCTGCAT 886 Query 794 TCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGCGCTGCGTGTGGCATATGA 853 |||| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| ||| Sbjct 887 TCGTTGAGATCATGGCTCCTGTATTTTCAAGAAACGCTTGGCGATGCGTGTGGCACGTGA 946 Query 854 TCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAGG 913 |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 947 TCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTGCACTCAGAAGATGTGTTGAG- 1005 Query 914 AGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGTGGATCGTTCATCAAT-TTATC 972 |||||| ||||||||||||| ||||||| || |||||| |||||||||||| || || Sbjct 1006 --CCTGCACATGAGAAGATAGGAGTAGTAGATTCTCAGTGGGTCGTTCATCAATCTTTTC 1063 Query 973 CCTTCCCTTGGCAACCAGGG-GAAAGCAGATA-ACGGGAAAGCACCATGGCAAGGGGTGA 1030 | ||||||||||||||| || || ||| | |||||||||| |||||||||||||| | Sbjct 1064 C-TTCCCTTGGCAACCAAGGTGAG-GCA-ACGGACGGGAAAGCGCCATGGCAAGGGGTAA 1120 Query 1031 GGGATAGATGTCAAAT-GGAATGGAAAATGTTCGAGAACAGAGTGG--AAGCCGCGGAAA 1087 |||||||||| |||| |||||||| ||||||| ||| ||| ||| || | ||||| | Sbjct 1121 GGGATAGATG-CAAAAAGGAATGGACAATGTTCCAGAGTAGAATGGCTAA-C-GCGGAGA 1177 Query 1088 AGGATTATTTCAGATCGTTACAAGTTGAAAGC-CCATCCAATTCAACA 1134 |||||||||||| ||| |||||||| ||| || || || ||||||||| Sbjct 1178 AGGATTATTTCAAATCCTTACAAGTAGAAGGCTCC-TCAAATTCAACA 1224 > Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 Length=1215 Score = 267 bits (144), Expect = 2e-70 Identities = 623/844 (74%), Gaps = 73/844 (9%) Strand=Plus/Plus Query 263 TTGCATCCGAATCGGACTTGTACTTGCGCAGATTATGGGGGA-ACCCTGATGAGGATTT- 320 ||||| ||||||| || || ||||| || ||||| | ||||| ||| | || ||||| Sbjct 341 TTGCAACCGAATCAGATTTTTACTTACGAAGATTGT-GGGGATTGCCTAAAGATGATTTA 399 Query 321 --AGT-GAAACAACC-GAGATATCTAGCAACATTTACAGTGGGTTAT-AATCAGAGACAC 375 ||| | | |||| || ||||||| | ||||| || |||| || ||| || | Sbjct 400 CCAGTGGTGA-AACCTAAG-TATCTAGTTGCTTTTACTGTTTCTTATGAA-CAGCGAAAA 456 Query 376 AATATAGATGCGTGTGT-TAGCAAGTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTA 434 || || ||||| || | || || || ||||| ||||| ||||| |||||||||||||| Sbjct 457 AACATTGATGCTTGCATCAAG-AAATTCTCAGATAACTTCACTATCGTTCTGTTTCATTA 515 Query 435 TGATGGCGTAACAAGTGCAT-GG-A-ATGATGAGTTTGAGTGGTCGAGGAA--TGCAATA 489 ||| | | || || | | || | ||||||| ||||| ||||| | || || ||| Sbjct 516 CGAT-G-G-AA-AA--ACCTCGGAATATGATGAATTTGAATGGTCTA--AACGGGCGATA 567 Query 490 CACATAAGTGTCA-AAAAGCAGACAAAATGGTGGTATGC--AAAGAGATTCTTGCACCCG 546 ||| | ||||| | ||||| || || ||||||||||| |||| | ||| |||| || Sbjct 568 CACGTGAGTGT-ACCTAAGCAAACCAAGTGGTGGTATGCTAAAAG-GTTTC-TGCATCCT 624 Query 547 GACATTGTAGCA-CGATACGATTATATATTCATATGGGATGAGGATCTTGGAGTTGATCA 605 || || ||||| || || || ||||||||||| |||||||| |||||||| ||||| | Sbjct 625 GATATCATAGCACCG-TATGAATATATATTCATTTGGGATGAAGATCTTGGTGTTGAAAA 683 Query 606 CTTTAATGCAGAAGAATACATAC-ACATAGTGAAGAAGCACGACCTTGAGATTTCGCAGC 664 ||| | |||||||| ||||| | | || ||||||||||| | || || || ||||| | Sbjct 684 CTTCGACGCAGAAGAGTACAT-CGAGATTGTGAAGAAGCATGGTCTAGAAATATCGCAAC 742 Query 665 CTGGTTTGG-ACCCAGAGACTGGGTTTA-ATTGGCAGATCACCAAA-AGAAGAGAACA-T 720 | | | ||| | | ||| | | | | | ||| |||| | |||| |||| | || Sbjct 743 CCGCTGTGGAATCAAGAAAAT-CAATCACA-TGGAAGAT-AACAAAGAGAATA-CCCAGA 798 Query 721 AGTGAAGTCCAC-AAGGAGACAGATGAGAAACTCGACTGG-TGCTCTAAT---CCTCCCC 775 || ||||| ||| ||| || | || ||||||| | | || ||| |||| |||| || Sbjct 799 AGCGAAGTTCACAAAGAAGTC-GAAGAGAAAC-C-A--GGCCGCTGTAATGACCCTCACC 853 Query 776 GGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGC 835 ||||| ||||| | || | ||||| |||||||| || |||||||||||| |||||| Sbjct 854 TACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCAAGAGATTCATGGC 913 Query 836 GCTGCGTGTGGCATATGATCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCAC 895 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 914 GCTGCGTGTGGCATATGATACAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGC 973 Query 896 TGAGAAGATGTGTTGAGGAGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGTGGA 955 | |||| |||||||||| |||||| ||||||||| || || || || || || |||| Sbjct 974 TAAGAAAATGTGTTGAG---CCTGCACATGAGAAGATTGGTATTGTGGATTCTCAATGGA 1030 Query 956 TCGTTCATCAATTTATCCCTTCCCTT-GGCAA-CCAGGGGAAA-GC--AGATAACGGGAA 1010 || |||||||| || ||||| || || || |||||| || || || || ||||| Sbjct 1031 TCATTCATCAAAAGATTCCTTCT-TTAGG-AAGCCAGGG-AACTGCGCAGG-AA-GGGAA 1085 Query 1011 AGCAC-CATGGCAAGGGGTGAGGGATAGATGTCAAATGG-AATGGAAAATGTT-CGAGAA 1067 | | | | | |||||||| || || |||||| ||| || |||||| |||||| | |||| Sbjct 1086 ATC-CGCGTTCCAAGGGGTAAGAGAGAGATGT-AAACGGGAATGGACAATGTTTC-AGAA 1142 Query 1068 CAGA 1071 ||| Sbjct 1143 AAGA 1146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46471835823 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5