BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24570.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204 1707 0.0
Ahg926055 jgi|Araly1|926055|scaffold_201616.1 693 0.0
Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 267 2e-70
> Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204
Length=1092
Score = 1707 bits (924), Expect = 0.0
Identities = 1038/1094 (95%), Gaps = 4/1094 (0%)
Strand=Plus/Plus
Query 55 ATGAAGCTTTTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTGTTATTGGACTATCT 114
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGAAGCTTCTTACAACAGCATTGTTTGCTATAGCTTTTGGCATTCTTGTTGGACTATCT 60
Query 115 TTTCCATCTTTATGGATCACTGAGACAAGTCTCCCGAGAAACCTTCTTCGCTCCATTGCT 174
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 TTTCCATCTTTATGGATCACTGAGACGAGTCTCCCCAGAAACCTTCTTCGCTCCATTGCT 120
Query 175 ATCTCACTTAGAGATTCCGGAATTGCAACTCCTCACAAAGCCATTGATATCTCAAAGGCA 234
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 121 ATCTCACTTAGAGATTCAGGAATTGCAACTCCTCCCAAGGCCATTGATATCTCAAAGGCA 180
Query 235 TGCGCTGAGAGATTACCATCCGGTATCATTGCATCCGAATCGGACTTGTACTTGCGCAGA 294
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 TGCGCTGAGAGATTACCACCCGGTATTATTGCATCCGAATCGGACTTGTATTTGCGCAGA 240
Query 295 TTATGGGGGAACCCTGATGAGGATTTAG-TGAAACAACCGAGATATCTAGCAACATTTAC 353
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 241 TTATGGGGGAACCCTGATGAGGATTT-GAAGAAGCAACCGAGATATCTAGCAACATTTAC 299
Query 354 AGTGGGTTATAATCAGAGACACAATATAGATGCGTGTGTTAGCAAGTTTTCAGAGAACTT 413
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 300 AGTGGGTTATAATCAGAGACACAATATAGATGCTTGTGTTAACAAGTTTTCAGACAACTT 359
Query 414 TACTATTGTTCTGTTTCATTATGATGGCG-TAACAAGTGCATGGAATGATGAGTTTGAGT 472
||| ||||||||||||||||| ||||| | |||||||||| ||||| |||||||||||||
Sbjct 360 TACAATTGTTCTGTTTCATTACGATGG-GATAACAAGTGCGTGGAACGATGAGTTTGAGT 418
Query 473 GGTCGAGGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 532
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTCGAAGAATGCAATACACATAAGTGTCAAAAAGCAGACAAAATGGTGGTATGCAAAGA 478
Query 533 GATTCTTGCACCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAGGATC 592
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 GATTCTTGCATCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAAGATC 538
Query 593 TTGGAGTTGATCACTTTAATGCAGAAGAATACATACACATAGTGAAGAAGCACGACCTTG 652
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct 539 TTGGAGTCGATCACTTTAACGCAGAAGAATACATACACATGGTGAAGAAGCACGGCCTTG 598
Query 653 AGATTTCGCAGCCTGGTTTGGACCCAGAGACTGGGTTTAATTGGCAGATCACCAAAAGAA 712
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 599 AGATTTCGCAGCCTGGTTTGGACCCAGAGAGAGGGTTTAACTGGCAGATCACCAAAAGAA 658
Query 713 GAGAACATAGTGAAGTCCACAAGGAGACAGATGAGAAACTCGACTGGTGCTCTAATCCTC 772
||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||
Sbjct 659 GAGAACATAGTGAAGTCCATAAGGAAACAGATGAAAAACTCGACTGGTGCTCTCATCCTC 718
Query 773 CCCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCAT 832
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 CTCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCGT 778
Query 833 GGCGCTGCGTGTGGCATATGATCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTG 892
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 GGCGCTGCGTCTGGCACATGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTG 838
Query 893 CACTGAGAAGATGTGTTGAGGAGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGT 952
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 CACTCAGAAGATGTGTTGAGGAGCCTGCATTTGAGAATATAGGAATAGTAGACTCACAGT 898
Query 953 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGGAAAGCAGATAACGGGAAAG 1012
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 899 GGATCGTTCATCAATTTATCCCTTCCCTTGGCAACCAGGGAAAAGAAGATAATGGGAAAG 958
Query 1013 CACCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1072
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGCCATGGCAAGGGGTGAGGGATAGATGTCAAATGGAATGGAAAATGTTCGAGAACAGAG 1018
Query 1073 TGGAAGCCGCGGAAAAGGATTATTTCAGATCGTTACAAGTTGAAAGCCCATCCAATTCAA 1132
| || |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 1019 TAGATGCCGCGGAAAAGGATTATTTCAAATCATTACAAGTCGAAAGCCCATCCAATTCAA 1078
Query 1133 CAACTTCTCATTAG 1146
|||| ||||| |||
Sbjct 1079 CAACCTCTCAATAG 1092
> Ahg926055 jgi|Araly1|926055|scaffold_201616.1
Length=1259
Score = 693 bits (375), Expect = 0.0
Identities = 726/888 (82%), Gaps = 54/888 (6%)
Strand=Plus/Plus
Query 271 GAATCGGACTTGTACTTGCGCAGATTATGGGGG-AACCCTG-ATGAGGATTTAG-TGAAA 327
||||| ||||| || |||||||||||||||||| | || | | |||||||| | |
Sbjct 367 GAATCAGACTTCTATTTGCGCAGATTATGGGGGTTA-CC-GCAGGAGGATTT-GACCAGT 423
Query 328 CAACCGAGATATCTAGCAACATTTACAGTGGGTTA-TAATCAGAGA-CACAATATAGATG 385
|||| ||||| || ||||| ||||||||||| || |||||||| | || ||||| ||||
Sbjct 424 GAACCAAGATACCTCGCAACGTTTACAGTGGG-TATTAATCAGAAAGCA-AATATTGATG 481
Query 386 CGTGTGT-TAGCAAGTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTATGATGGCGTA 444
| ||||| || ||||||||||| ||||| |||||||| |||||||| ||||| | ||
Sbjct 482 CTTGTGTCAAG-AAGTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGA-CG-GT- 537
Query 445 ACAAGTGCATGGAAT--GATGAGTTTGAGTGGTCGAGGAATGCAATACACATAAGTGT-C 501
||||| | || | ||||||||||| ||||||| || ||| |||||||| || || |
Sbjct 538 -CAAGT-AACCGAGTGGGATGAGTTTGAATGGTCGAAGACTGCTATACACATTAGCGTGC 595
Query 502 AAAAAGCAGACAAAATGGTGGTATGCAAAGAGATTCTTGCACCCGGACATTGTAGCACGA 561
|||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 596 -GAAAGCAGACAAAATGGTGGTATGCAAAGAGGTTTTTGCACCCTGATATTGTAGCACGA 654
Query 562 TACGATTATATATTCATATGGGATGAGGATCTTGGAGTTGATCACTTTAATGCAGAAGAA 621
|| |||||||| ||||| |||||||| || ||||| || || || ||||||||||||||
Sbjct 655 TATGATTATATCTTCATCTGGGATGAAGACCTTGGGGTCGAGCATTTTAATGCAGAAGAG 714
Query 622 TACATACACATAGTGAAGAAGCACGACCTTGAGATTTCGCAGCCTGGTTTGGACCCAGAG 681
|||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||| |
Sbjct 715 TACATAAAGATGGTGAAGAAGCATGGCCTGGAGATTTCCCAACCTGGCTTGGAACCA-A- 772
Query 682 ACT-GGGTTTAAT-TGGCAGATCACCAAA-AGAAGAGAACATAGTG-AAGTCCACAAGGA 737
|| ||| |||| |||||||| || ||| ||| ||| | ||| || ||||||||||| |
Sbjct 773 ACCAGGGATTAACGTGGCAGATGAC-AAAGAGACGAGGAGATA-TGGAAGTCCACAAG-A 829
Query 738 GA-CAGATGAGAA-AC-TCGACTGGTGCTCTA-ATCCTCCCCGGCCTCCATGTGCTGCAT 793
| |||| || || || | || |||||||| | |||||| | ||||||||||||||||
Sbjct 830 TAACAGAAGA-AAGACCTGGA-TGGTGCTC-AGATCCTCATCTCCCTCCATGTGCTGCAT 886
Query 794 TCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGCGCTGCGTGTGGCATATGA 853
|||| ||||| |||||||||||||| |||||| | || ||||| ||||||||||| |||
Sbjct 887 TCGTTGAGATCATGGCTCCTGTATTTTCAAGAAACGCTTGGCGATGCGTGTGGCACGTGA 946
Query 854 TCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAGG 913
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 947 TCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTGCACTCAGAAGATGTGTTGAG- 1005
Query 914 AGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGTGGATCGTTCATCAAT-TTATC 972
|||||| ||||||||||||| ||||||| || |||||| |||||||||||| || ||
Sbjct 1006 --CCTGCACATGAGAAGATAGGAGTAGTAGATTCTCAGTGGGTCGTTCATCAATCTTTTC 1063
Query 973 CCTTCCCTTGGCAACCAGGG-GAAAGCAGATA-ACGGGAAAGCACCATGGCAAGGGGTGA 1030
| ||||||||||||||| || || ||| | |||||||||| |||||||||||||| |
Sbjct 1064 C-TTCCCTTGGCAACCAAGGTGAG-GCA-ACGGACGGGAAAGCGCCATGGCAAGGGGTAA 1120
Query 1031 GGGATAGATGTCAAAT-GGAATGGAAAATGTTCGAGAACAGAGTGG--AAGCCGCGGAAA 1087
|||||||||| |||| |||||||| ||||||| ||| ||| ||| || | ||||| |
Sbjct 1121 GGGATAGATG-CAAAAAGGAATGGACAATGTTCCAGAGTAGAATGGCTAA-C-GCGGAGA 1177
Query 1088 AGGATTATTTCAGATCGTTACAAGTTGAAAGC-CCATCCAATTCAACA 1134
|||||||||||| ||| |||||||| ||| || || || |||||||||
Sbjct 1178 AGGATTATTTCAAATCCTTACAAGTAGAAGGCTCC-TCAAATTCAACA 1224
> Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323
Length=1215
Score = 267 bits (144), Expect = 2e-70
Identities = 623/844 (74%), Gaps = 73/844 (9%)
Strand=Plus/Plus
Query 263 TTGCATCCGAATCGGACTTGTACTTGCGCAGATTATGGGGGA-ACCCTGATGAGGATTT- 320
||||| ||||||| || || ||||| || ||||| | ||||| ||| | || |||||
Sbjct 341 TTGCAACCGAATCAGATTTTTACTTACGAAGATTGT-GGGGATTGCCTAAAGATGATTTA 399
Query 321 --AGT-GAAACAACC-GAGATATCTAGCAACATTTACAGTGGGTTAT-AATCAGAGACAC 375
||| | | |||| || ||||||| | ||||| || |||| || ||| || |
Sbjct 400 CCAGTGGTGA-AACCTAAG-TATCTAGTTGCTTTTACTGTTTCTTATGAA-CAGCGAAAA 456
Query 376 AATATAGATGCGTGTGT-TAGCAAGTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTA 434
|| || ||||| || | || || || ||||| ||||| ||||| ||||||||||||||
Sbjct 457 AACATTGATGCTTGCATCAAG-AAATTCTCAGATAACTTCACTATCGTTCTGTTTCATTA 515
Query 435 TGATGGCGTAACAAGTGCAT-GG-A-ATGATGAGTTTGAGTGGTCGAGGAA--TGCAATA 489
||| | | || || | | || | ||||||| ||||| ||||| | || || |||
Sbjct 516 CGAT-G-G-AA-AA--ACCTCGGAATATGATGAATTTGAATGGTCTA--AACGGGCGATA 567
Query 490 CACATAAGTGTCA-AAAAGCAGACAAAATGGTGGTATGC--AAAGAGATTCTTGCACCCG 546
||| | ||||| | ||||| || || ||||||||||| |||| | ||| |||| ||
Sbjct 568 CACGTGAGTGT-ACCTAAGCAAACCAAGTGGTGGTATGCTAAAAG-GTTTC-TGCATCCT 624
Query 547 GACATTGTAGCA-CGATACGATTATATATTCATATGGGATGAGGATCTTGGAGTTGATCA 605
|| || ||||| || || || ||||||||||| |||||||| |||||||| ||||| |
Sbjct 625 GATATCATAGCACCG-TATGAATATATATTCATTTGGGATGAAGATCTTGGTGTTGAAAA 683
Query 606 CTTTAATGCAGAAGAATACATAC-ACATAGTGAAGAAGCACGACCTTGAGATTTCGCAGC 664
||| | |||||||| ||||| | | || ||||||||||| | || || || ||||| |
Sbjct 684 CTTCGACGCAGAAGAGTACAT-CGAGATTGTGAAGAAGCATGGTCTAGAAATATCGCAAC 742
Query 665 CTGGTTTGG-ACCCAGAGACTGGGTTTA-ATTGGCAGATCACCAAA-AGAAGAGAACA-T 720
| | | ||| | | ||| | | | | | ||| |||| | |||| |||| | ||
Sbjct 743 CCGCTGTGGAATCAAGAAAAT-CAATCACA-TGGAAGAT-AACAAAGAGAATA-CCCAGA 798
Query 721 AGTGAAGTCCAC-AAGGAGACAGATGAGAAACTCGACTGG-TGCTCTAAT---CCTCCCC 775
|| ||||| ||| ||| || | || ||||||| | | || ||| |||| |||| ||
Sbjct 799 AGCGAAGTTCACAAAGAAGTC-GAAGAGAAAC-C-A--GGCCGCTGTAATGACCCTCACC 853
Query 776 GGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGC 835
||||| ||||| | || | ||||| |||||||| || |||||||||||| ||||||
Sbjct 854 TACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCAAGAGATTCATGGC 913
Query 836 GCTGCGTGTGGCATATGATCCAGAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCAC 895
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 914 GCTGCGTGTGGCATATGATACAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGC 973
Query 896 TGAGAAGATGTGTTGAGGAGCCTGCATTTGAGAAGATAGGAATAGTAGACTCACAGTGGA 955
| |||| |||||||||| |||||| ||||||||| || || || || || || ||||
Sbjct 974 TAAGAAAATGTGTTGAG---CCTGCACATGAGAAGATTGGTATTGTGGATTCTCAATGGA 1030
Query 956 TCGTTCATCAATTTATCCCTTCCCTT-GGCAA-CCAGGGGAAA-GC--AGATAACGGGAA 1010
|| |||||||| || ||||| || || || |||||| || || || || |||||
Sbjct 1031 TCATTCATCAAAAGATTCCTTCT-TTAGG-AAGCCAGGG-AACTGCGCAGG-AA-GGGAA 1085
Query 1011 AGCAC-CATGGCAAGGGGTGAGGGATAGATGTCAAATGG-AATGGAAAATGTT-CGAGAA 1067
| | | | | |||||||| || || |||||| ||| || |||||| |||||| | ||||
Sbjct 1086 ATC-CGCGTTCCAAGGGGTAAGAGAGAGATGT-AAACGGGAATGGACAATGTTTC-AGAA 1142
Query 1068 CAGA 1071
|||
Sbjct 1143 AAGA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5