BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24575.1

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472890 jgi|Araly1|472890|fgenesh2_kg.1__2844__AT1G24575.1         667    0.0  


> Ahg472890 jgi|Araly1|472890|fgenesh2_kg.1__2844__AT1G24575.1
Length=453

 Score =  667 bits (361),  Expect = 0.0
 Identities = 429/459 (93%), Gaps = 16/459 (3%)
 Strand=Plus/Plus

Query  25   TCCAAACAAGAAAGAGCTAGTTTAAGAATGGTACTTGGAAACTCCTCCA------GTCAC  78
            |||||| ||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct  1    TCCAAATAAGAAAGAGCTAGTTTAAGAATGGTACTTGGAAACTCCTCCAGTTCTGGTCAC  60

Query  79   AAATCTCATCACCATCAACATCATAATCATCATCACCGGGACTCGATGAAGGAGTTCCGA  138
            ||||||||||| |||| ||  |||||||||||||| |||||||||||||||||||||| |
Sbjct  61   AAATCTCATCATCATC-AC--CATAATCATCATCATCGGGACTCGATGAAGGAGTTCCAA  117

Query  139  GCTGTCTTTGCAGCCGAAGAACCAATCCAGGGCTTCGAGTATGCAGATATGAGGAGGTCA  198
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  118  GCTGTCTTTGCAGCCGAAGAACCTATCCAGGGCTTCGAGTATGCAGATATGAGGAGGTCA  177

Query  199  AAGAGCGAGAATATGGGCACTAGAGAGGTTGCAAAAGCAGAGGATGTTGACAAAGAAGCT  258
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  178  AAGAGCGAGAATATGGGCACGAGAGAGGTTGCAAAAGCAGAGGATGTTGACAAAGAAGCT  237

Query  259  GAGCAATTCATCAAGTTTGAGCATACGAAGTTCAGTAAGTGGATGACTAAGAGCGCCTAG  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GAGCAATTCATCAAGTTTGAGCATACGAAGTTCAGTAAGTGGATGACTAAGAGCGCCTAG  297

Query  319  TC-TATGTGGACGAAGAATAA-AAAGTAATAAATGACAAACCATAATATATAGATTGTAT  376
             | |||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||
Sbjct  298  -CGTATGTGGACGAAGAATAAGAAA-TAATAAGTGACATACCATAATATATAGATTGTAT  355

Query  377  TGTATGATTTGTGTT-TCTTCTTC-TGGTTTTTATTTTTGTTATGTAACAAAATGGGTGC  434
            |  |||||||||||| | |||||| || | |||||||| |||||||||||||||||||| 
Sbjct  356  TAAATGATTTGTGTTCTGTTCTTCCTG-TATTTATTTTGGTTATGTAACAAAATGGGTGT  414

Query  435  TGTTTCCTTTGTCTAGAAAGGTGCATGGAAATAAAGACT  473
            |||||||||||||||||||||||||||||||||||||||
Sbjct  415  TGTTTCCTTTGTCTAGAAAGGTGCATGGAAATAAAGACT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17894971241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5