BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24577.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921724 jgi|Araly1|921724|scaffold_103005.1 342 1e-93
> Ahg921724 jgi|Araly1|921724|scaffold_103005.1
Length=296
Score = 342 bits (185), Expect = 1e-93
Identities = 227/247 (92%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 26 CTTCTTC--TTTAATATTCACATTATGAACGACAAAGGAAACATGGAGACTGAAGCTTCC 83
||||||| ||| ||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 1 CTTCTTCTATTTCATATTCAAATTATGAACGACAAAGGAATCATGGAAACTGAAGCTTCC 60
Query 84 ATAGCGGCGATGGGCCTTGGGGGTCTGTCCCGTCAGACCAGCATCACTAAGACCATTTGC 143
|||||||||||||||||||| || |||||||||||||||||||||||||||| || |||
Sbjct 61 ATAGCGGCGATGGGCCTTGGCGGACTGTCCCGTCAGACCAGCATCACTAAGAACAGCTGC 120
Query 144 ATTTGCTCACCGACCACTCACCCGGGGTCATTCAAGTGCAAGCTTCACCGGACTCCTTCG 203
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ATTTGCTCACCGACCACTCACCCGGGGTCATTCAGGTGCAAGCTTCACCGGACTCCTTCG 180
Query 204 CTGCAGCGTAACAAAAGCGTTGAGACTAACATTCTTCAAAGTCTCATGA-CAAAGCCAGA 262
|||||||||| ||||||||||||||||||||| ||||||| ||| ||| ||| ||||||
Sbjct 181 CTGCAGCGTACCAAAAGCGTTGAGACTAACATACTTCAAAATCTTGTGAGCAA-GCCAGA 239
Query 263 TCATTCT 269
| |||||
Sbjct 240 TGATTCT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5