BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24577.1 Length=555 Score E Sequences producing significant alignments: (Bits) Value Ahg921724 jgi|Araly1|921724|scaffold_103005.1 342 1e-93 > Ahg921724 jgi|Araly1|921724|scaffold_103005.1 Length=296 Score = 342 bits (185), Expect = 1e-93 Identities = 227/247 (92%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 26 CTTCTTC--TTTAATATTCACATTATGAACGACAAAGGAAACATGGAGACTGAAGCTTCC 83 ||||||| ||| ||||||| ||||||||||||||||||| |||||| |||||||||||| Sbjct 1 CTTCTTCTATTTCATATTCAAATTATGAACGACAAAGGAATCATGGAAACTGAAGCTTCC 60 Query 84 ATAGCGGCGATGGGCCTTGGGGGTCTGTCCCGTCAGACCAGCATCACTAAGACCATTTGC 143 |||||||||||||||||||| || |||||||||||||||||||||||||||| || ||| Sbjct 61 ATAGCGGCGATGGGCCTTGGCGGACTGTCCCGTCAGACCAGCATCACTAAGAACAGCTGC 120 Query 144 ATTTGCTCACCGACCACTCACCCGGGGTCATTCAAGTGCAAGCTTCACCGGACTCCTTCG 203 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 ATTTGCTCACCGACCACTCACCCGGGGTCATTCAGGTGCAAGCTTCACCGGACTCCTTCG 180 Query 204 CTGCAGCGTAACAAAAGCGTTGAGACTAACATTCTTCAAAGTCTCATGA-CAAAGCCAGA 262 |||||||||| ||||||||||||||||||||| ||||||| ||| ||| ||| |||||| Sbjct 181 CTGCAGCGTACCAAAAGCGTTGAGACTAACATACTTCAAAATCTTGTGAGCAA-GCCAGA 239 Query 263 TCATTCT 269 | ||||| Sbjct 240 TGATTCT 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20260617759 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5