BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24580.1

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921726 jgi|Araly1|921726|scaffold_103007.1                        595    1e-169


> Ahg921726 jgi|Araly1|921726|scaffold_103007.1
Length=454

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 399/433 (92%), Gaps = 17/433 (4%)
 Strand=Plus/Plus

Query  1    GGGTCTCTCGCATTTTCCAACAGCGTCAGAAGGAGTACTACCACTTCTGGTGATGAACAC  60
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  23   GGGTCTTTCGCATTTTCCGACAGCGTCAGAAGGAGTACTACCACTTCTGGTGATGAACAC  82

Query  61   GGTTGTTTCAATCACTCTGTTGAAGAACATGGTGAGGTCTGTTTTTCAAATTGTTGCATC  120
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  83   GGTTGTTTCAGTCACTCTGTTGAAGAACATGGTGAGGTCTGTTTTTCAAATTGTTGCATC  142

Query  121  CGAGACTGAATCTTCCATGGAGATAGACGACGAGCCTGAAGATGATTTTGTT-ACTAGAA  179
            ||||||||||||||||||||||||||| |||||||||||||| |||||  || |  ||||
Sbjct  143  CGAGACTGAATCTTCCATGGAGATAGAAGACGAGCCTGAAGAGGATTTC-TTGAGGAGAA  201

Query  180  GAATCTCGATAACACAGTTCAAGTCTCTATGTGAGAACATAG-A-A-GA-G--GAAGAAG  233
            |||||||||| ||||| ||||||||||||| |||||||| || | | || |  |||||||
Sbjct  202  GAATCTCGATTACACACTTCAAGTCTCTATATGAGAACAGAGGAGAAGAAGAAGAAGAAG  261

Query  234  AAGA-GAA-A-G-G-----TGTGGAGTGTTGTGTGTGCCTTTGTGGGTTTAAAGAGGAAG  284
            |||| ||| | | |     |||||||||||||||||| || |||||||||||||||||||
Sbjct  262  AAGAAGAAGAAGAGAGAGGTGTGGAGTGTTGTGTGTGTCTGTGTGGGTTTAAAGAGGAAG  321

Query  285  AGGAAGTGAGTGAGTTGGTTTCTTGCAAGCATTTCTTCCACAGAGCTTGTCTAGACAACT  344
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  322  AGGAAGTGAGTGAGTTGGTTTCTTGCAAGCATTTCTTCCACAGGGCTTGTCTAGACAACT  381

Query  345  GGTTTGGTAATAACCACACCACATGCCCTCTTTGCAGGTCCATTCTCTAGTGGTGGAATC  404
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  382  GGTTTGGTAATAACCACACCACATGTCCTCTTTGCAGGTCCATTCTCTAGTGGTGGAATC  441

Query  405  TTGTTTTACACTT  417
            |||||| ||||||
Sbjct  442  TTGTTTCACACTT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23636208540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5