BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24590.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921723 jgi|Araly1|921723|scaffold_103004.1 1456 0.0
> Ahg921723 jgi|Araly1|921723|scaffold_103004.1
Length=958
Score = 1456 bits (788), Expect = 0.0
Identities = 876/919 (95%), Gaps = 4/919 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGCAATCATGAGACTCGAAGGTGCCGAGCACAGAGAAACCAACATCCATTCT 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGAAGAAGCAATTATGAGACTCGAAGGTGCCGAGCACAGAGAAACCAACAACCATTCT 80
Query 61 TTGAAA-AGAAAGCCATCAAGAACTTCCTCGACAGCTCCTGGCTCTCCCGGAGGAGTAAC 119
| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 81 CT-AAAGAGAAAGCCATCAAGGCCTTCCTTGACAGCTCCTGGCTCTCCCGGAGGAGTAAC 139
Query 120 TACCGCAAAAGCTGCCTCCGGCGCCGGCGCTTCCGGTGTCTCTACGATAAGGTACCGAGG 179
|||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 140 TACCGCAAAAGCTGCCTCTGGCGCCGGCGCTTCCGGTGGCTCTACCATAAGGTACCGAGG 199
Query 180 CGTGAGGCGTAGGCCATGGGGTCGTTACGCAGCTGAAATACGGGACCCATTGTCCAAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CGTGAGGCGTAGGCCATGGGGTCGTTACGCAGCTGAAATACGGGACCCATTGTCCAAGGA 259
Query 240 GAGACGATGGCTCGGAACATTTGACACGGCCGAGGAAGCAGCTTGCGCATATGACTGCGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 260 GAGACGATGGCTCGGAACATTTGACACGGCCGAGGAAGCAGCTTGCGCATACGACTGCGC 319
Query 300 CGCTCGAGCCATGCGTGGTCTTAAAGCTCGAACCAACTTCGTCTACCCAATGCCTTCTCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CGCTCGAGCCATGCGTGGTCTTAAAGCTCGAACCAACTTCGTCTACCCAATGCCTTCTCT 379
Query 360 CGACTCTTATCACCACCGTATTTTCTCGTCTCCTCCAATGAATATGTTCCTTCTACGAGA 419
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 380 CGACTCTTATCACCATCGTATTTTCTCTTCTCCTCCAATGAATATGTTCCTTCTACGAGA 439
Query 420 CGTGTTAAACTCTCAGTCTCTTTCTCCGTTAACCACTTTCGCTTACCCGCCTTGTAATCT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CGTTTTAAACTCTCAGTCTCTTTCTCCGTTAACCACTTTCGCTTACCCGCCTTGTAATCT 499
Query 480 TTCTAACGTAAACGACGTTGTTCACGAGTCCTTCACTAACGTCAACGATGTCTGTGAAGA 539
| |||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 500 TCCTAATGTAAACGACGTCGTTCACGAGTCCTTCACTAACGTTAACGATGTCTCCGAAGA 559
Query 540 TCTCTCGCCTAAAGCTAAGAGGTCAAGTACCATTGAGAACGAGAGCCTGATATCAAATAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 560 TCTCTCGCCTAAAGCTAAGAGGTCAAGTACCATTGAGAACGAGAGCCTGATCTCAAATAT 619
Query 600 CTTTGAACCAGAACCAGCTAGTTCTGGTCTTCTTCAAGAAATTGTTCAAGGCTTCTTACC 659
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 620 CTTTGAACCAGAACCAGCTGGTTCTGGTCTTCTCCAAGAAATTGTTCAAGGCTTCTTACC 679
Query 660 AAAACCTATCTCTCAACATGCTTCTATACCTCCAAAGAGCAACCAACAGTCGGTTGGTGT 719
|||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||
Sbjct 680 AAAACCTATCTCTCAACATGATTCTATAGCTCCAAAGAGTAACCAACCGTCGGTTGGTGT 739
Query 720 TTTCCCGACGATGCCAGAGAGCGGTTTTCAGACAGATGTTCGTTTAGCTGACTTCCATGT 779
||||||||| |||||||||| ||||||||||||| ||||||||||| | ||| | || |
Sbjct 740 TTTCCCGACCATGCCAGAGACCGGTTTTCAGACAAATGTTCGTTTACCGGACGGCAATTT 799
Query 780 CGAAGGAAACGGATTCGGTCAGGTTAAATATCATGGAGAGTTAGGTTGGGCTGATCATGA 839
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 800 CGAAGGAAACGGATTCGGTCAGGTGAAATATCATGGAGAGTTGGGTTGGGCTGATCATGA 859
Query 840 GA-ATGGGTTTGATTCAGCTAAGATGCAGCAGAACGGAAATGGTGGAATGTTTTATCAGT 898
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GAGA-GAGTTTGATTCAGCTAAGATGCAGCAGAACGGAAATGGTGGAATGTTTTATCAGT 918
Query 899 ATTGCTTTCATGATGATTA 917
|||||||||||||| ||||
Sbjct 919 ATTGCTTTCATGATTATTA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5