BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24600.1

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921722 jgi|Araly1|921722|scaffold_103003.1                        401    2e-111
  Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1         104    5e-22 


> Ahg921722 jgi|Araly1|921722|scaffold_103003.1
Length=266

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 248/263 (94%), Gaps = 2/263 (1%)
 Strand=Plus/Plus

Query  41   CTCTT-TGGCTTCACTCCCGATTTGTAATGGAGAAGAAGGCCAATCATGGAGATGATGTG  99
            ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  1    CTCTTCTGGTTTCACTCCCGATTTGGAATGGAGAAGAAGGCCAATCATGGAGATGATGGG  60

Query  100  CAAGAGAGTGTTCCTATTATCCATAGCCAAGTCGTGAAGATCAAAAGGGAGTTTGAGAAG  159
            || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CATGAGAGTGTTCCTCCTATCCATAGCCAAGTCGTGAAGATCAAAAGGGAGTTTGAGAAG  120

Query  160  ATACAACACCCGTCACTAAAGCAGCCTGAGATGCCGTTAGTGTTCCGCGAGATCATGGGT  219
            |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct  121  ATACAACACCCGTCACTAAAGCAGCCTGAGATGCCGTTGGTGCTCCGTGAGATCATGGGT  180

Query  220  CCACGTCGTTCCCGTTCTCCCCTCGGTTTAGGAGAGCGAGAGAGATCAATCCCGGTTGGG  279
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  181  CCACGGCGTTCCCGTTCTCCCCTCGGTTTAGGAGAGCGAGAGAGATCCATCCCCGTTGGG  240

Query  280  AATTGATA-CAAAAGGAGAGAGA  301
            |||||||| ||||| ||||||||
Sbjct  241  AATTGATAACAAAAAGAGAGAGA  263


> Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1
Length=1703

 Score =  104 bits (56),  Expect = 5e-22
 Identities = 66/71 (93%), Gaps = 0/71 (0%)
 Strand=Plus/Minus

Query  343   CAATGTAAATATCTTTGGTTAATATGATGAGTCTCCTGTTTAATATCCTGAAACAACATC  402
             |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| 
Sbjct  1703  CAATGTAAATATCTTTGGTTAATATGATGAGTCTTCGGTTTAATATCCTCAAACAACATA  1644

Query  403   TCTTTTACCTC  413
             |||||| ||||
Sbjct  1643  TCTTTTGCCTC  1633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14842524121


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5