BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24610.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1 2601 0.0
> Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1
Length=1703
Score = 2601 bits (1408), Expect = 0.0
Identities = 1609/1707 (94%), Gaps = 9/1707 (1%)
Strand=Plus/Plus
Query 20 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATAGCTTCTCTAGCAGCTCAAAT 79
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATGGCTTCTCTGGCAGCTCAAAT 60
Query 80 CCGTCCCTTCACATGTTTGGCCGCGTCTCTGCCGTCACGGTTGGCGCCTCATCCACCAGA 139
|||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 61 TCGTCCCTTCACATGTTTGGCCGCGTCTCAGCCGTCGCGGTTGACGCCTCATCCACCAGA 120
Query 140 CCTCATCCGGTGGATCAAGCGAGAAGGCGGCTTCGTTCACCACGCGGTTAAGCTCTCTCA 199
|||||||||||||||||| |||||||| || |||||||||||||| || |||||||||||
Sbjct 121 CCTCATCCGGTGGATCAAACGAGAAGGTGGTTTCGTTCACCACGCCGTCAAGCTCTCTCA 180
Query 200 GGAGACTCAATTTGGTATCGGACTCATTTCCACCGAGCAAATCTCTCCAGGCACCGACCT 259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GGAGACTCAATTTGGTATCGGACTCATTTCCACAGAGCAAATCTCTCCAGGCACCGACCT 240
Query 260 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATTCGTCATCTTCATC 319
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 241 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATGCGTCATCGTCATC 300
Query 320 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCTGAAGAACTGTGGGCAATGAAATT 379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCCGAAGAACTGTGGGCAATGAAATT 360
Query 380 GGGATTGAGGTTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATTAG 439
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GGGATTGAGATTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATCAG 420
Query 440 CAATCTCCCGGAAACTTATACTGTTCCCATATTCTTTCCCGGAGAAGATATCAAAAACTT 499
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 421 CAATCTCCCGGAAACTTTTACTGTTCCTATATTCTTTCCCGGAGAAGATATCAAGAACTT 480
Query 500 GCAATATGCTCCTCTTCTCCACCAGGTCAACAAAAGATGCCGTTTTCTTCTTGAGTTTGA 559
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GCAATATGCCCCTCTTCTTTACCAGGTCAATAAAAGATGCCGTTTTCTTCTTGAGTTTGA 540
Query 560 GCAAGAGATTAGACGTACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 619
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAAGAGATTAGACGCACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 600
Query 620 AGATGTAAATGCATCTGCCCTAGGGTGGACTATGTCAGCTGTTTCAACTAGAGCGTTTCG 679
||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 601 AGATGTAAATGCATCCGCTCTCGGGTGGACTATGTCAGCTGTTTCCACTAGAGCGTTTCG 660
Query 680 TTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 720
Query 740 TTTGATAGATATGTGCAACCACAGCTTCAAACCTAATGCTC-GGATCATTCAAGAACAGA 798
| ||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||
Sbjct 721 TCTGATAGATATGTGCAACCACAGCTTTAAACCAAATG-TCAGGATCATTCAAGAACAGA 779
Query 799 ACGGAGCTGACTCTAATACTCTTGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGAAAACG 858
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 780 ACGGAGCTGACTCAAATACTCTAGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGTAAACG 839
Query 859 ATCCTTTGCTACTTAACTATGGTTGCCTTAGTAATGATTTTTTCCTTTTGGACTACGGAT 918
||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 840 ATCCTTTGCTACTCAACTATGGCTGCCTTAGCAATGATTTTTTTCTTTTGGACTATGGAT 899
Query 919 TTGTGATCGAATCAAATCCATACGATACAATTGAGCTTAAATACGATGAACAGCTTATGG 978
||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 900 TTGTGATTGAATCAAATCCATACGACACCATTGAGCTTAAATACGATGAACAGCTCATGG 959
Query 979 ATGCGGCTAGCATGGCGGCTGGTGTTTCTTCCCCAAAATTCTCTTCACCAGCTCCATGGC 1038
| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 960 ACGCTGCAAGCATGGCGGCTGGTGTTTCTTCCCCAAAGTTCTCTTCACCGGCTCCATGGC 1019
Query 1039 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGGGAAATGCCAAATCTGAAGGTAACCA 1098
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGAGAAATGCCAAATCTGAAGGTAACCA 1079
Query 1099 TTGGAGGCCCAGAGCCAGTAGAGGGACGACTATTGGCGGCGTTAAGGATACTGCTTTGTG 1158
| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1080 TAGGAGGCCCAGAGCCAGTAGAGAGACGACTATTGGCAGCCATAAGGATACTGCTTTGTG 1139
Query 1159 GTGAACTGGTGGAAGTAGAGAAGCATGACTCAGACACGCTGAAATCTTTATCCGCCGTAG 1218
||||| ||||| |||| ||||||||||||| |||||| |||||||||||||| ||| |||
Sbjct 1140 GTGAATTGGTGAAAGTTGAGAAGCATGACTTAGACACACTGAAATCTTTATCGGCCATAG 1199
Query 1219 CCCCTTTTGGAATTGCAAACGAGATTGCCGTTTTCCGTACTGTAATCGCTCTGTGTGTGA 1278
||||| |||||||||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 1200 CCCCTCTTGGAATTGCAAACGAGATTGCGGTTTTCCGCACTGTAATCGCCCTTTGTGTGA 1259
Query 1279 TTGCATTGAGCCATTTTCCGACAAAAATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1338
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 TTGCATTGAGCCACTTTCCGACAAAGATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1319
Query 1339 TTTCAGCCACAGCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1398
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTTCAGCCACATCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1379
Query 1399 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCTTCTAAGGAGACACCAACTG 1458
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCGTCTAAGGAGACACCAACTG 1439
Query 1459 CTGCATAAGAACCACCTCCTGTAAGTTCTCTAAGCTTGGCTTGTTTCAAACGTCAATTTC 1518
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 CTGCATAAGAACCATCTCCTGTAAGTTCTCTAGGCTTGGCTTGTTTCAAACGTCAATTTT 1499
Query 1519 CAAGATGAGTATGTTTAAGGTTATTCATTTTGAAAAACATATACCGACC-ACTATTTCTC 1577
|||||||| | |||||||||||| | ||| ||||||||||||| ||| | | ||||||||
Sbjct 1500 CAAGATGACT-TGTTTAAGGTTAATAATTCTGAAAAACATATAGCGATCGA-TATTTCTC 1557
Query 1578 TATTAACTAGCAT--TTTCA-TCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1634
||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TATGAACTAGC-TGGTTTCCCTCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1616
Query 1635 AGGGAGATTAAAATGAGAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCA 1694
|||| ||||||||||||||| |||||| ||||||||| |||||||||||| | |||||||
Sbjct 1617 AGGGTGATTAAAATGAGAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCA 1676
Query 1695 TCATATTAACCAAAGATATTTACATTG 1721
|||||||||||||||||||||||||||
Sbjct 1677 TCATATTAACCAAAGATATTTACATTG 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5