BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24610.1 Length=1721 Score E Sequences producing significant alignments: (Bits) Value Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1 2601 0.0 > Ahg472886 jgi|Araly1|472886|fgenesh2_kg.1__2840__AT1G24610.1 Length=1703 Score = 2601 bits (1408), Expect = 0.0 Identities = 1609/1707 (94%), Gaps = 9/1707 (1%) Strand=Plus/Plus Query 20 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATAGCTTCTCTAGCAGCTCAAAT 79 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATGGCTTCTCTGGCAGCTCAAAT 60 Query 80 CCGTCCCTTCACATGTTTGGCCGCGTCTCTGCCGTCACGGTTGGCGCCTCATCCACCAGA 139 |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| Sbjct 61 TCGTCCCTTCACATGTTTGGCCGCGTCTCAGCCGTCGCGGTTGACGCCTCATCCACCAGA 120 Query 140 CCTCATCCGGTGGATCAAGCGAGAAGGCGGCTTCGTTCACCACGCGGTTAAGCTCTCTCA 199 |||||||||||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct 121 CCTCATCCGGTGGATCAAACGAGAAGGTGGTTTCGTTCACCACGCCGTCAAGCTCTCTCA 180 Query 200 GGAGACTCAATTTGGTATCGGACTCATTTCCACCGAGCAAATCTCTCCAGGCACCGACCT 259 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 GGAGACTCAATTTGGTATCGGACTCATTTCCACAGAGCAAATCTCTCCAGGCACCGACCT 240 Query 260 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATTCGTCATCTTCATC 319 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 241 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATGCGTCATCGTCATC 300 Query 320 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCTGAAGAACTGTGGGCAATGAAATT 379 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCCGAAGAACTGTGGGCAATGAAATT 360 Query 380 GGGATTGAGGTTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATTAG 439 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 361 GGGATTGAGATTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATCAG 420 Query 440 CAATCTCCCGGAAACTTATACTGTTCCCATATTCTTTCCCGGAGAAGATATCAAAAACTT 499 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| Sbjct 421 CAATCTCCCGGAAACTTTTACTGTTCCTATATTCTTTCCCGGAGAAGATATCAAGAACTT 480 Query 500 GCAATATGCTCCTCTTCTCCACCAGGTCAACAAAAGATGCCGTTTTCTTCTTGAGTTTGA 559 ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 481 GCAATATGCCCCTCTTCTTTACCAGGTCAATAAAAGATGCCGTTTTCTTCTTGAGTTTGA 540 Query 560 GCAAGAGATTAGACGTACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 619 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAAGAGATTAGACGCACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 600 Query 620 AGATGTAAATGCATCTGCCCTAGGGTGGACTATGTCAGCTGTTTCAACTAGAGCGTTTCG 679 ||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| Sbjct 601 AGATGTAAATGCATCCGCTCTCGGGTGGACTATGTCAGCTGTTTCCACTAGAGCGTTTCG 660 Query 680 TTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 739 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 720 Query 740 TTTGATAGATATGTGCAACCACAGCTTCAAACCTAATGCTC-GGATCATTCAAGAACAGA 798 | ||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||| Sbjct 721 TCTGATAGATATGTGCAACCACAGCTTTAAACCAAATG-TCAGGATCATTCAAGAACAGA 779 Query 799 ACGGAGCTGACTCTAATACTCTTGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGAAAACG 858 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 780 ACGGAGCTGACTCAAATACTCTAGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGTAAACG 839 Query 859 ATCCTTTGCTACTTAACTATGGTTGCCTTAGTAATGATTTTTTCCTTTTGGACTACGGAT 918 ||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct 840 ATCCTTTGCTACTCAACTATGGCTGCCTTAGCAATGATTTTTTTCTTTTGGACTATGGAT 899 Query 919 TTGTGATCGAATCAAATCCATACGATACAATTGAGCTTAAATACGATGAACAGCTTATGG 978 ||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 900 TTGTGATTGAATCAAATCCATACGACACCATTGAGCTTAAATACGATGAACAGCTCATGG 959 Query 979 ATGCGGCTAGCATGGCGGCTGGTGTTTCTTCCCCAAAATTCTCTTCACCAGCTCCATGGC 1038 | || || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 960 ACGCTGCAAGCATGGCGGCTGGTGTTTCTTCCCCAAAGTTCTCTTCACCGGCTCCATGGC 1019 Query 1039 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGGGAAATGCCAAATCTGAAGGTAACCA 1098 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1020 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGAGAAATGCCAAATCTGAAGGTAACCA 1079 Query 1099 TTGGAGGCCCAGAGCCAGTAGAGGGACGACTATTGGCGGCGTTAAGGATACTGCTTTGTG 1158 | ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| Sbjct 1080 TAGGAGGCCCAGAGCCAGTAGAGAGACGACTATTGGCAGCCATAAGGATACTGCTTTGTG 1139 Query 1159 GTGAACTGGTGGAAGTAGAGAAGCATGACTCAGACACGCTGAAATCTTTATCCGCCGTAG 1218 ||||| ||||| |||| ||||||||||||| |||||| |||||||||||||| ||| ||| Sbjct 1140 GTGAATTGGTGAAAGTTGAGAAGCATGACTTAGACACACTGAAATCTTTATCGGCCATAG 1199 Query 1219 CCCCTTTTGGAATTGCAAACGAGATTGCCGTTTTCCGTACTGTAATCGCTCTGTGTGTGA 1278 ||||| |||||||||||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 1200 CCCCTCTTGGAATTGCAAACGAGATTGCGGTTTTCCGCACTGTAATCGCCCTTTGTGTGA 1259 Query 1279 TTGCATTGAGCCATTTTCCGACAAAAATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1338 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1260 TTGCATTGAGCCACTTTCCGACAAAGATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1319 Query 1339 TTTCAGCCACAGCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1398 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TTTCAGCCACATCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1379 Query 1399 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCTTCTAAGGAGACACCAACTG 1458 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1380 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCGTCTAAGGAGACACCAACTG 1439 Query 1459 CTGCATAAGAACCACCTCCTGTAAGTTCTCTAAGCTTGGCTTGTTTCAAACGTCAATTTC 1518 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1440 CTGCATAAGAACCATCTCCTGTAAGTTCTCTAGGCTTGGCTTGTTTCAAACGTCAATTTT 1499 Query 1519 CAAGATGAGTATGTTTAAGGTTATTCATTTTGAAAAACATATACCGACC-ACTATTTCTC 1577 |||||||| | |||||||||||| | ||| ||||||||||||| ||| | | |||||||| Sbjct 1500 CAAGATGACT-TGTTTAAGGTTAATAATTCTGAAAAACATATAGCGATCGA-TATTTCTC 1557 Query 1578 TATTAACTAGCAT--TTTCA-TCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1634 ||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1558 TATGAACTAGC-TGGTTTCCCTCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1616 Query 1635 AGGGAGATTAAAATGAGAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCA 1694 |||| ||||||||||||||| |||||| ||||||||| |||||||||||| | ||||||| Sbjct 1617 AGGGTGATTAAAATGAGAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCA 1676 Query 1695 TCATATTAACCAAAGATATTTACATTG 1721 ||||||||||||||||||||||||||| Sbjct 1677 TCATATTAACCAAAGATATTTACATTG 1703 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64562965275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5