BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24620.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335836 jgi|Araly1|335836|fgenesh1_pg.C_scaffold_1002401 963 0.0
> Ahg335836 jgi|Araly1|335836|fgenesh1_pg.C_scaffold_1002401
Length=579
Score = 963 bits (521), Expect = 0.0
Identities = 545/557 (98%), Gaps = 0/557 (0%)
Strand=Plus/Plus
Query 7 ATGTTCAACAAAAACCAAGGATCCAACGGTGGTTCATCTTCCAATGTCGGCATCGGAGCT 66
||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 ATGTTCAACAAAAACAAAGGATCCAACGGTGGTTCATCTTCCCATGGCGGCATCGGAGCT 60
Query 67 GATTCACCTTACCTTCAAAAGGCACGTTCAGGCAAAACAGAGATCAGAGAACTCGAAGCA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCACCTTACCTTCAAAAGGCACGTTCAGGCAAAACAGAGATCAGAGAACTCGAAGCA 120
Query 127 GTTTTCAAGAAATTCGACGTGAACGGAGATGGTAAGATCTCGTCAAAGGAACTTGGTGCA 186
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 GTTTTTAAAAAATTCGACGTGAATGGAGATGGTAAGATCTCGTCAAAGGAGCTTGGTGCA 180
Query 187 ATAATGACGAGTCTAGGTCATGAGGTACCAGAAGAAGAACTAGAGAAAGCGATCACTGAG 246
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAATGGCGAGTCTAGGTCATGAGGTACCAGAAGAAGAACTAGAGAAAGCGATCACTGAG 240
Query 247 ATAGATCGTAAAGGAGATGGTTACATAAACTTTGAAGAGTTTGTGGAGCTGAACACGAAA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATAGATCGTAAAGGAGATGGTTACATAAACTTTGAAGAGTTTGTGGAGCTGAACACGAAA 300
Query 307 GGTATGGATCAAAATGATGTTTTGGAGAATCTGAAAGATGCGTTTTCGGTTTACGATATC 366
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTATGGATCAGAATGATGTTTTGGAGAATCTGAAAGATGCGTTTTCGGTTTACGATATC 360
Query 367 GATGGGAATGGTTCGATATCGGCTGAGGAGTTGCATGAGGTTTTGAGGAGTCTTGGTGAT 426
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGGGAATGGTTCGATTTCGGCTGAGGAGTTGCATGAGGTTTTGAGGAGTCTTGGTGAT 420
Query 427 GAATGTTCGATCGCGGAGTGTAGGAAGATGATTGGTGGTGTTGATAAAGATGGTGATGGT 486
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATGTTCGATCGCCGAGTGTAGGAAGATGATTGGTGGTGTTGATAAAGATGGTGATGGT 480
Query 487 ACGATTGATTTTGAAGAGTTTAAGATTATGATGACTATGGGATCTAGACGTGATAATGTC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 ACGATTGATTTTGAAGAGTTTAAGATTATGATGACTATGGGATCTAGACGTGATAATTTC 540
Query 547 ATGGGAGGTGGTCCGAG 563
|||||||||||||||||
Sbjct 541 ATGGGAGGTGGTCCGAG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5