BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24625.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472884 jgi|Araly1|472884|fgenesh2_kg.1__2838__AT1G24625.1 1448 0.0
> Ahg472884 jgi|Araly1|472884|fgenesh2_kg.1__2838__AT1G24625.1
Length=1024
Score = 1448 bits (784), Expect = 0.0
Identities = 965/1046 (92%), Gaps = 38/1046 (4%)
Strand=Plus/Plus
Query 1 TTGCGTTTCCACATTTGTTTAAACATAA----ctctctctctctctctctctctc---tc 53
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 TTGCGTTTCCACATTTGTTTAAACATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTC 60
Query 54 tctct--ctcagtacctcttattcttatgctcttcttcaccaatcctatctcttctatct 111
||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TCTCTCCCTCAATACCTCTTATTCTTATGCTCTTCTTCACCAATCCTATATCTTCTATCT 120
Query 112 gtctTTATTTTCTCTACATGTGAATTGACCCATTTCTGGTAAACACATAGAGTACCACTT 171
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 GTCTTTTTTTTCTCAACATGTGAATTGACCCATTTCTGGTAAACTCAAAGAGTACCACTT 180
Query 172 TTCTTATTTAGA-T-TCTTCTTCCTCTTCATAGCTTCCAAGTCAACTACTTCAGCTTCTG 229
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTATTTAGATTCTCTTCTTCCTCTTCATAGCTTCCAAGTCAACTACTTCAGCTTCTG 240
Query 230 TCGGCTGTCTCTTCC-CAGATCTCGTTAAGACCAAAACTTGGAATAAATGACGGAATCTG 288
|||||||||||| || ||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 241 TCGGCTGTCTCT-CCTCAGATCTCGTTAAGACCGAAAGTTCGAATAAATGACGGAATCTG 299
Query 289 ATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATC 348
|||||||||| |||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct 300 ATGATGCCTCGCGAGAAACACCACCCAGCAGAGAAGGAGAAGCCTCTTCAAATCAAGATC 359
Query 349 TGTCCAAACCAGAATCAAACCATGTTTCACTCGATCTCAAGCTCAACGATACTTTCAACG 408
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 360 TGTCCAAACCAGAATCAAACCCTGTCTCACTCGATCTCAAGCTCAACGATAGTTTCAACG 419
Query 409 ATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCA 468
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ATGAGACAAAGAGCACAAAGTGTGAAGCAAACCCGAGAGTCTTCTCTTGCAACTACTGCA 479
Query 469 GACGCAAGTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAA 528
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||
Sbjct 480 GACGCAAGTTCTATAGCTCTCAGGCACTTGGAGGTCACCAGAACGCTCACAAGCGTGAAC 539
Query 529 GAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCACCATCACAGGCCTT 588
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAACAATGGCCAAGCGAGCAATGCACATGGGAAGAATGTTTGGTCACCATCACAGGCCTT 599
Query 589 ACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCT 648
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 ATACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCACCACACCT 659
Query 649 TATCTCAGCCTCAGCCTCTTGTTTCTAGGTTTCATCATCAAGGGTATTTTGGTAACACCG 708
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 TATCTCAGCCTCAGCCTCTTGTTTCTAGGTTTCATCATCAAGGCTATTTTGGTAACACCG 719
Query 709 TGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCC 768
|||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 720 TGCCATTGTTCTTTGACTATGACGATGGCGGCAGCGACTTCTTCTGGCCTGGGAGCTTCC 779
Query 769 GTCAGGTGGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGT-ACTGAGTCAGGC 827
|||||||||||||||||||||||||||||||||| | | ||||| || |||||| ||||
Sbjct 780 GTCAGGTGGTTGAGGAAGCTGAGGCTCCGGTGGT-G-G-TGGCT-GTTACTGAGCCAGGT 835
Query 828 CTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGCTCAAAGCCTGAT 887
|||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 836 CTTGATCTGAACTCGGTTGCGGCGAATGGAGGTGTAGATAATAATAATTCAAAGCCTGAT 895
Query 888 CTTACCTTAAGACTCTAAAAGGATTAAGGAGATTATATCTTTATTGTTATTTTTCTATTG 947
|||||||||||||||||| | | | | |||| ||| ||||| |||||
Sbjct 896 CTTACCTTAAGACTCTAA-----T-A------TC-TCTCTT----GTTCTTTTTATATTG 938
Query 948 TTAGACATA---CAGAAGATAAGTTGGAGACAGTTGATAGAAATTGATGAAAAACTTTGT 1004
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 939 TTAGACATATAGCAGAAGATAAGTTGGAGACAGTTGATAGAAATTGATGAAAAACGTTGT 998
Query 1005 TGTTATATTAAATGAGGTTGTTCATT 1030
||||||||||||||||||||||||||
Sbjct 999 TGTTATATTAAATGAGGTTGTTCATT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5