BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24650.1
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313416 jgi|Araly1|313416|fgenesh1_pm.C_scaffold_1002196 3725 0.0
> Ahg313416 jgi|Araly1|313416|fgenesh1_pm.C_scaffold_1002196
Length=2685
Score = 3725 bits (2017), Expect = 0.0
Identities = 2479/2696 (92%), Gaps = 55/2696 (2%)
Strand=Plus/Plus
Query 4 ATCGCAAAAAACTTCCTCCTTTTGCTCTGTTTCATTGCCTTGGTGAACGTTGAATCGAGC 63
|||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 7 ATCGCAAAAAGCTTCCTCCTTTTGCTCTGTTTCATCGCCTTGGTGAACGGGGAATCGAGC 66
Query 64 CCTGATGAGGCGG---TCATGATAGCTCTGAGAGACTCCTTGAAGCTATCTGGAAATC-C 119
||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| || |
Sbjct 67 CCTGATGAGGCGGTCATCATGATAGCTCTGAGAGACTCCCTGAACCTAACTGGAAGTCTC 126
Query 120 AAACTGGTCCGGGTCGGATCCTTGTAAGTGGTCTATG-TTCATAAAATGCGACG---CAA 175
||||||||||| |||||||||||||||||||| | || || ||||||||| |||
Sbjct 127 -AACTGGTCCGGTTCGGATCCTTGTAAGTGGTC---GCTT-GTACAATGCGACGACACAA 181
Query 176 GCAATCGGGTCACCGCGATCCAAATCGGGGACAGAGGAATCTCAGGAAAGCTACCTCCTG 235
||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 182 GCAATAGGGTCACCGCGATCCAAATCGGGGGCAAAGGAATCTCAGGAACGCTACCTCCTG 241
Query 236 ATCTCGGAAAGCTAACATCTTTGACGAAGTTCGAGGTCATGAGGAACCGTTTAACAGGAC 295
|||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 242 ATCTCGGAAATCTAACATCTTTGACTAAGTTCGAGGTCATGAGGAACCATTTAACAGGGC 301
Query 296 CAATACCGAGTCTTGCTGGGTTGAAATCGTTGGTAACTGTGTATGCTAATGACAATGATT 355
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 CAATCCCGAGTCTTGCTGGGTTGAAATCGTTGGTAACGGTGTATGCTAATGACAATGATT 361
Query 356 TCACTTCTGTCCCTGAGGATTTCTTCTCTGGTTTGAGTTCTCTTCAG-CATGTTTCTCTG 414
||||||||||||||| |||||||||| |||||||||||||||||||| | ||| ||||||
Sbjct 362 TCACTTCTGTCCCTGTGGATTTCTTCACTGGTTTGAGTTCTCTTCAGTC-TGTGTCTCTG 420
Query 415 GATAACAATCCTTTTGATTCTTGGGTGATACCTCCGAGTTTGGAAAACGCGACTTCCCTT 474
|||||||||||||||| ||||||| || ||||||||||||||| |||||||| | ||
Sbjct 421 GATAACAATCCTTTTGTTTCTTGGAAAATCCCTCCGAGTTTGGAAGACGCGACTGCTCTA 480
Query 475 GTAGATTTCTCTGCTGTCAACTGCAATCTTTC-CGGGAAGATCCCGGATTATCTCTTCGA 533
| ||||||||| |||||||||||||||||||| ||||| ||||||| || | || |||
Sbjct 481 GCAGATTTCTCCGCTGTCAACTGCAATCTTTCAGGGGAA-ATCCCGGGTT-T-TC-TCG- 535
Query 534 G-GGGAAAGATTTCTCTAGTTTGACGACTCTGAAACTGTCTTATAACTCGCTTGTATGTG 592
| || ||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 536 GTGGAAAAAATTTCTCTAGTTTGACGACTCTGAAACTTTCTTATAATTCGCTTGTAGGTG 595
Query 593 AATTTCCCATGAATTTCTCCGACTCACGTGTTCAAGTTCTGATGCTTAACGGGCAAAAGG 652
|| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 596 AACTTCCGATGAATTTCTCCGAATCACGTGTTGAAATTCTGATGCTTAACGGGCAAAAGG 655
Query 653 GAAG-GGAGAAGCTTCATGGGTCAATTTCGTTTCTGCAAAAGATGACTTCTTTGACCAAT 711
| || ||||||||| ||||||||||||||| |||||||||| |||||| |||| ||||||
Sbjct 656 G-AGCGGAGAAGCTCCATGGGTCAATTTCGGTTCTGCAAAACATGACTGCTTTAACCAAT 714
Query 712 GTTACGCTGCAAGGGAACAGCTTCTCCGGTCCTTTACCAGACTTTTCTGGTTTAGTCTCG 771
|||||||||||||||||||||||||| |||||||||||| ||| |||| || ||||||||
Sbjct 715 GTTACGCTGCAAGGGAACAGCTTCTCGGGTCCTTTACCAAACTGTTCTCGTCTAGTCTCG 774
Query 772 TTGAAAAGTTTCAATGTTAGGGAGAATCAGCTTTCGGGTCTCGTTCCCTCTTCTTTGTTT 831
|||||||||| ||||||||||||||||||||| |||| || |||||| | |||||||||
Sbjct 775 CTGAAAAGTTTTAATGTTAGGGAGAATCAGCTTACGGGCCTTGTTCCCCCCTCTTTGTTT 834
Query 832 GAGCTGCAATCTCTTTCTGATGTTGCTTTAGGTAATAACTTGCTTCAAGGACCAACTCCA 891
||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 835 GAGCTTCAATCTCTTTCTGATGTGGCTTTAGGCAATAACTTGCTCCAAGGACCAACTCCA 894
Query 892 AACTTCACGGCTCCTGACATTAAGCCTGATCTGAATGGTCTCAATAGTTTCTGCTTAGAT 951
|||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 895 AACTTCACGGCTCCCAACATTAAGCCTGATATGACTGGGCTCAATAGTTTCTGCTTAGAT 954
Query 952 ACTCCAGGTACTTCTTGTGATCCCCGTGTCAACACGTTGCTTTCAATCGTTGAAGCCTTT 1011
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACCCCAGGTACTCCTTGTGATCCCCGTGTCAACACGTTGCTTTCAATCGTTGAAGCCTTT 1014
Query 1012 GGTTACCCGGTGAATTTTGCGGAGAAATGGAAAGGAAATGATCCTTGTAGTGGATGGGTA 1071
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1015 GGTTACCCGGTGAATTTTGCGGAGAAATGGAAAGGAAATGATCCTTGTAATAGATGGGTA 1074
Query 1072 GGGATCACTTGTACTGGAACTGATATCACAGTTATCAACTTCAAAAACTTGGGGCTCAAC 1131
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1075 GGGATCACTTGTACTGGAACTGATATCACTGTTATTAACTTCAAAAACTTGGGGCTCAAC 1134
Query 1132 GGCACTATATCTCCAC-GATTTGCTGATTTTGCGTCTCTTC-GTGTTATTAATCTCTCTC 1189
|||||||| ||||||| | ||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1135 GGCACTATCTCTCCACTG-TTTGCTGATCTTGCGTCTCTTCAG-GTTATTAATCTCTCTC 1192
Query 1190 AGAATAATCTTAATGGTACTATTCCACAAGAGCTCGCTAAGTTGAGTAACTTGAAAACAC 1249
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1193 AGAATAATCTTAGTGGTACTATTCCACAAGAGCTCACTAAGTTGAGTAACTTGAAAACTC 1252
Query 1250 TGGATGTTTCGAAGAATCGGTTGTGTGGTGAAGTACCTCGTTT-TAACACAACTA---TT 1305
| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1253 TAGATGTTTCGAATAATCGGTTGTGTGGTGAAGTACC-GGTTTCTAACACAACTATTTTT 1311
Query 1306 G-T-TAA-CACGACTGGGAA-T----T-T---TGAGGACTGTCCT-AA---T--GGCAAT 1347
| | ||| ||||| |||||| | | | | |||| |||||| || | || ||
Sbjct 1312 GTTGTAATCACGAGTGGGAATTCCGATATAAATAAGGAATGTCCTAAATCTTCCGGGGAT 1371
Query 1348 GCTGGAAAGAAAGCATCTAGTAATGCTGGGAAAATTGTTGGTTCTGTTATTGGTATTTTG 1407
| ||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1372 GGTGGCAAGAAAGCATCTCGCAATGCTGGGAAAATTGTTGGTTCTGTTATTGGCATTTTG 1431
Query 1408 TTAGCTTTGCTTCTTATAGGGGTTGCTATTTTCTTTTTGGTCAAGAAAAAGATGCAATAT 1467
|||||||||||||| || || ||||||| ||||| |||||||||||||||| |||||||
Sbjct 1432 TTAGCTTTGCTTCTCATCGGATTTGCTATCTTCTTGTTGGTCAAGAAAAAGAAGCAATAT 1491
Query 1468 CATAAGATGCATCCTCAACAACAATCTAGTGACCAAGATGCGTTCAAGATTACAATTGAG 1527
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1492 CATAAGATGCATCCTCAACAACAATCTAGTGACCAAGATGCATTCAAGATTACAATTGAG 1551
Query 1528 AATCTGTGTACTGGTGTTAGTGAAAGTGGATTCAGTGGTAATGACGCTCATCTAGGAGAA 1587
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AATCTGTGTACTGGTGGTAGTGAAAGTGGATTCAGTGGTAATGACGCTCATCTAGGAGAA 1611
Query 1588 GCTGGAAATATTGTGATCTCAATACAAGTTTTGAGGGATGCTACATATAATTTCGATGAG 1647
||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1612 GCTGGGAATATTGTGATCTCAATACAAGTTTTGAGAGATGCTACAGATAATTTCGACGAG 1671
Query 1648 AAGAATATACTTGGGAGAGGAGGATTTGGAATAGTTTACAAGGGAGAGTTGCATGATGGA 1707
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AAGAATATACTTGGCAGAGGAGGATTTGGAATAGTTTACAAGGGAGAGTTGCATGATGGA 1731
Query 1708 ACAAAGATTGCGGTTAAGAGAATGGAATCTTCGATTATAAGTGGAAAGGGTTTAGATGAG 1767
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1732 ACAAAGATTGCGGTTAAGAGAATGGAGTCTTCGATTATAAGTGGAAAGGGTTTAGATGAA 1791
Query 1768 TTTAAATCAGAGATTGCTGTTCTTACTAGAGTTCGCCACCGAAATCTAGTGGTTCTTCAT 1827
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1792 TTTAAATCAGAGATTGCTGTTCTTACTAGAGTTCGACACCGTAACCTAGTGGTTCTTCAT 1851
Query 1828 GGTTATTGCTTAGAAGGCAATGAGAGACTTCTTGTTTATCAGTACATGCCACAAGGGACA 1887
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1852 GGTTATTGTTTAGAAGGCAATGAGAGGCTTCTGGTTTATCAGTACATGCCACAAGGGACA 1911
Query 1888 TTAAGTAGGCATAT-TTTCTATTGGAAGGAAGAAGGGTTGAGGCCTCTCGAGTGGACTAG 1946
|||||||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||||
Sbjct 1912 TTAAGTAGGCATATGTTTC-ATTGGCAGGAAGAAGGTTTGAAGCCACTCGAGTGGACTAG 1970
Query 1947 ACGGTTGATTATTGCATTGGATGTGGCTAGAGGAGTTGAGTATTTGCATACTTTAGCACA 2006
|||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1971 ACGGTTGAGTATCGCATTGGATGTGGCTAGAGGAGTGGAGTATTTACATACTTTAGCGCA 2030
Query 2007 TCAAAGTTTCATACACAGAGATCTTAAACCTTCTAATATTCTTCTTGGAGATGACATGCA 2066
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 2031 TCAAAGTTTCATACACAGAGATCTCAAACCTTCTAATATTCTTCTTGGAGACGATATGCA 2090
Query 2067 TGCTAAAGTTGCTGATTTTGGTTTAGTCCGGCTTGCACCAGAAGGTACACAATCAATTGA 2126
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2091 TGCTAAAGTTGCTGATTTTGGTTTAGTCCGGCTTGCGCCAGAAGGTACACAATCAATTGA 2150
Query 2127 GACCAAGATTGCTGGAACATTTGGTTATCTTGCACCAGAGTATGCAGTGACCGGAAGAGT 2186
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2151 GACCAAAATTGCTGGAACATTTGGTTATCTTGCACCAGAATATGCAGTGACCGGAAGAGT 2210
Query 2187 TACAACAAAGGTTGATGTTTACAGCTTTGGAGTCATCCTCATGGAGCTACTAACGGGTCG 2246
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2211 TACAACAAAGGTTGATGTTTACAGCTTCGGAGTTATCCTCATGGAGCTACTAACGGGTCG 2270
Query 2247 AAAAGCTCTTGATGTTGCACGATCTGAGGAAGAAGTACATCTTGCCACATGGTTTAGGAG 2306
|||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2271 AAAAGCTCTTGATGCCACGCGATCTGAGGAAGAGGTACACCTTGCCACATGGTTTAGGAG 2330
Query 2307 AATGTTTATCAACAAAGGCTCATTCCCAAAGGCGATAGA-CGAAGCAATGGAGGTCAACG 2365
||||||||||||||||| ||| || ||||||||||| || | || |||| ||||||||||
Sbjct 2331 AATGTTTATCAACAAAGACTCGTTTCCAAAGGCGATCGATC-AAACAATTGAGGTCAACG 2389
Query 2366 AAGAGACACTCAGAAGCATCAACATAGTAGCTGAGCTTGCCAATCAATGTAGCTCCAGGG 2425
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 AAGAGACACTTGGAAGCATCAACATAGTAGCTGAGCTTGCCAATCAATGTAGCTCCAGGG 2449
Query 2426 AACCGCGAGATAGACCCGACATGAATCACGTTGTCAACGTGTTGGTCTCACTTGTTGTAC 2485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2450 AACCGCGAGATAGACCCGACATGAATCACGTGGTCAACGTGTTGGTCTCACTTGTTGTAC 2509
Query 2486 AATGGAAACCCACAGAACGAAGCAGTGACTCGGAAGATATCTATGGAATTGATTACGACA 2545
|||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| |
Sbjct 2510 AATGGAAACCGACAGAGCGAAGCAGTGACTCCGACGATATCTATGGAATCGATTACGATA 2569
Query 2546 CTCCTCTTCCTCAACTTATTCTTGATTCGTGtttttttGGAGATAATACTCTGACGAGCA 2605
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2570 CTCCTCTTCCTCAACTTATTCTTGATTCGTCTTATTTTGGAGATAATACTCTGATGAGCA 2629
Query 2606 TACCTTCGCGACCTTCCGAGCTTGAAAGCACATTCAAATCAGGACAAGGGAGGTAA 2661
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2630 TACCGTCGCGACCTTCGGAGCTTGAAAGCACATTCAAATCAGGACAAGGGAGGTAA 2685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100367795575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5