BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24735.2
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313414 jgi|Araly1|313414|fgenesh1_pm.C_scaffold_1002194 893 0.0
> Ahg313414 jgi|Araly1|313414|fgenesh1_pm.C_scaffold_1002194
Length=588
Score = 893 bits (483), Expect = 0.0
Identities = 555/590 (94%), Gaps = 4/590 (1%)
Strand=Plus/Plus
Query 402 ATGGTTTGTGCTTGTATGCGTAGAAGCGAGATGGAGGTACCGGTTGATGAGGGGCATTTC 461
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATTTGTGTTTGTATGCGTAGAAGCGAGATGGAGGTACCGGTGGATGAGGGGCATTTC 60
Query 462 CTATCTATGCTTCTAAAGATAATGAATGCCAAAAAGACGATAGAGCTTGGTGTTTTCACC 521
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTATCGATGCTTATAAAGATAATGAATGCCAAAAAGACGATAGAGCTTGGTGTTTTCACC 120
Query 522 GGTTATTCGTTGCTCACCACGGCCCTAGCATTGCCTCATGATGGACATGTTACTGGAATA 581
||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||| ||||
Sbjct 121 GGTTATTCGTTACTCACAACTGCCCTTGCATTGCCTCATGATGGACATATTACTGCAATA 180
Query 582 GATATTGATAAAGAAGCTTACGAGATGGGACTGGAGTTCATAAAGAATGCAGGTGTTCAT 641
|| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||
Sbjct 181 GACATTGATAAAGAAGCTTACGAGGTGGGACTAGAGTTCATAAAAAATGCAGGTGTTGAT 240
Query 642 CACAAGATCAATTTCATCCACTCTGATTGTCTTCAGGCCTTAGACAATATGTTGAGTGAG 701
|| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 241 CATAAGATCAATTTCATCCAATCTGATTGTCTTCGGGCCTTAGACAAGATGTTGAGTGAG 300
Query 702 AATCCAAAACCAGAGTTTGATTTCGCATTTGTTGACGCTGATAAACCAAACTATGCAAAC 761
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AATCCAAAACCAGAGTTTGATTTCGCATTTGTTGATGCTGATAAACCAAACTATGCAAAC 360
Query 762 ATGCACGAGAGGCTAATGAAGCTGGTGAAGGTAGGAGGAGTCATAGCGTTTGATAACACA 821
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 ATGCACGAGAGACTAATGAAGCTGGTGAAGGTAGGAGGAATCATAGCGTTTGATAACACA 420
Query 822 TTGTGGT-CAGGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGTGCACATGAGGGTAAA 880
||||||| | |||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 421 TTGTGGTTC-GGGTTTGTGGCGGAGAAAGAGGAAAACGTGCCAGAGCACATGAGGATGAA 479
Query 881 CAGAAAAGCCTTTTTGGACTTGAACAAGC-GTCTCGCTGCTGATCCTCACGTCGAGGTCT 939
||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| |||
Sbjct 480 CAGAAAAGCCTTTTTGGACTTGAACAAGCAG-CTCGCTGCTGATCCTCGCATCGAGCTCT 538
Query 940 CTCAAGTCTCCATTGGCGATGGTGTCACTCTCTGCAGACGCCTTGTATGA 989
|||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 539 CTCAAGTCTCCATTGGTGATGGTGTCACTCTCTGTAGACGCCTTGTATGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5