BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25145.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 1397 0.0
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 1397 bits (756), Expect = 0.0
Identities = 873/931 (94%), Gaps = 2/931 (0%)
Strand=Plus/Plus
Query 1 ATGAGACTCCCCGTCACCGTCAAAGCCACTAAGCCGTCGTTTCTCGTCATTTGGATCCGA 60
|||| |||| ||||||||||||||||||| |||||||||| ||| || | ||||||||||
Sbjct 826 ATGACACTCTCCGTCACCGTCAAAGCCACAAAGCCGTCGTCTCTTGTTACTTGGATCCGA 885
Query 61 TACTCCTCCGCCGCGTCGTCGCCGACAGTCTCCTTGAATCCAAGTGGACGATTACAGCAA 120
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 886 TACTCCTCCGCCGCATCGTCGCCGACAATCTCCTTGAATACAAGTGGACGATTACAGCAA 945
Query 121 ACTCTCGCAGGATCTGTGGAAGTGAAAGGAAAATCTCTGCACTCCGGTAAGTTCTCGACG 180
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 946 ACTCTCGCGGGATCTGTGGAAGTGAAAGGAAAATCTCTGCATTCCGGTAAGTTCTCGACG 1005
Query 181 GTGAAGCTAAATCCGGAGATCGCCGGAGCTGGTAGGTTCTTCGAGTTTCGATCCAGATTC 240
|||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1006 GTGAAGCTAATTCCGGAGATCGCCGGAGCTGGTAGATACTTCGAGTTTCGGTCCAGATTC 1065
Query 241 ATCCCTGCGTCGATTGAATTTGCTCAGGAATCGCCTCTTTGCACGACGCTGTTGAAAGAT 300
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1066 ATCCCTGCGTCGATTGAATTTGCTCAGGAATCGCCTCTTTGCACTACTCTGTTGAAAGAT 1125
Query 301 GAGCTCAAAATCCGAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCGAAGGGAGTTGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1126 GAGCTCAAAATCCGAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCGAAAGGAGTTGAT 1185
Query 361 AATTGCAGGATTCAAATCG-AGAGCGAAAGTTCCGATGATCGAGAAGTCGAGGTCCCTAT 419
||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1186 AATTGCAGGATTCAAATCGCA-AGCGAAAGTTCATATGATCGAGAAGTCGAGGTCCCTAT 1244
Query 420 TTTTGATGGATCAGCTAAAGAATGGGTCGATGCGATACAAGGAGTTGGCATAAACGCGGC 479
||||||||||||||||||||||||||||||||| ||| |||||||||| |||| | |||
Sbjct 1245 TTTTGATGGATCAGCTAAAGAATGGGTCGATGCAATAGAAGGAGTTGGTTTAAAGGTGGC 1304
Query 480 TCAAAACCATGATGGTGAAAGTGTAGAGAAGATGGTCGCACATGTGAACAAGCCTGTGTA 539
||||||||||| |||||||| ||| ||||| |||||| ||||||||||||||| ||||||
Sbjct 1305 TCAAAACCATGTTGGTGAAAATGTGGAGAACATGGTCTCACATGTGAACAAGCATGTGTA 1364
Query 540 TGTTTGCAAGAACGATACTTTTGTTGCTGCATTTCCGGCTCTAGAGACTCGGATCACTTG 599
||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1365 CGTTTGCAAGAACGATTCTTTTGTCGCTGCATTTCCAGCTCTAGAGACTCGGATCACTTG 1424
Query 600 TGGTATCGACTTCCCACAGGTGCCTGCTATAGGCTGCCAATGGTTTTCTTGGAGACCTAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGGTATCGACTTCCCACAGGTGCCTGCTATAGGCTGCCAATGGTTTTCTTGGAGACCTAT 1484
Query 660 CCATGAGTCTTCTTTTGCAAAGGATATCGCATCATCAAGAACCTTCTGTGTCTATGAAGA 719
|||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1485 CCATGAGTCTTCCTTTGCAAAGGATATTGCACCATCAAGAACCTTCTGTGTGTATGAAGA 1544
Query 720 GGTGGAGCGTATGCGTGAAGCAGGGCTCATTAAAGGAGGTTCTCTGGATAACGCCATAGT 779
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1545 GGTGGAGCGCATGCGTGAAGCAGGGCTCATTAAAGGAGGTTCTCTGGATAACGCAATCGT 1604
Query 780 TTGTAGCGCTGAGCATGGATGGATGAATCCTCCTCTGCGGTTTGATGATGAAGCATGTCG 839
||||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1605 TTGTAGCACCGAGCATGGATGGATGAATCCTACTCTGCGGTTTGAAAATGAAGCATGTCG 1664
Query 840 ACATAAGATTCTTGACCTAATCGGTGACCTCTCCCTTGTTTCACGGGGCGGAAATGGAGG 899
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1665 CCATAAGATCCTTGACCTAATCGGTGACCTCTCCCTTGTAGCACGAGGCGGAAATGGAGG 1724
Query 900 ACTCCCCGTGGCTCACATAGTCGCATATAAG 930
||||||||||||||||||| |||||| ||||
Sbjct 1725 ACTCCCCGTGGCTCACATAATCGCATTTAAG 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5