BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25220.2
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484144 jgi|Araly1|484144|fgenesh2_kg.5__136__AT1G25220.1 1040 0.0
Ahg472860 jgi|Araly1|472860|fgenesh2_kg.1__2814__AT5G57890.1 1035 0.0
Ahg900162 jgi|Araly1|900162|Al_scaffold_0004_812 843 0.0
Ahg484722 jgi|Araly1|484722|fgenesh2_kg.5__714__AT5G57890.1 531 8e-150
Ahg484723 jgi|Araly1|484723|fgenesh2_kg.5__715__AT1G25220.1 496 3e-139
Ahg887377 jgi|Araly1|887377|Al_scaffold_0358_2 398 8e-110
> Ahg484144 jgi|Araly1|484144|fgenesh2_kg.5__136__AT1G25220.1
Length=1004
Score = 1040 bits (563), Expect = 0.0
Identities = 668/718 (93%), Gaps = 10/718 (1%)
Strand=Plus/Plus
Query 378 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 437
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 288 CAGTATATGGGAGAGCTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTA 347
Query 438 GAAGAGCTGaaaaaaaaaaaTCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTACCCCT 497
|| |||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 348 GAGGAGCTGAAAAGAAAAAATCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTACCCCT 407
Query 498 CAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTT 557
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 408 CAAGACTCTGGGATTTCCTTGCAAACCGTTTTGGAACTCGGACCACTTGTTCCTTTATTT 467
Query 558 GGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 468 GGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGGCA 527
Query 618 CCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAA 587
Query 678 GGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGATC 737
||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||| |||
Sbjct 588 GGCTTGTTCTCTGGACAATCTAACCCTTTCCTTGTAGGTAGATATCACAGCCTCGTTATC 647
Query 738 GAAAAAGATACATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTG 797
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GAAAAAGATTCATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTG 707
Query 798 GTAATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTCCAATTTCATCCGGAG 857
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 708 GTTATGGCTGCCCGTCACAGGAAGTACAAGCATATACAGGGAGTTCAATTTCATCCGGAG 767
Query 858 AGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATAGTAGAGAAA 917
||||||||||||||||| ||||| ||||||||| |||| ||||||||| | |||||||||
Sbjct 768 AGTATTATAACAACTGAAGGCAAAACAATTGTCGGCAACTTCATCAAACTCGTAGAGAAA 827
Query 918 AAGGAGTCCGAGAAGCTGACATAGACTA-GCCTGAATGAGAAA--A--T---CAGCTGTG 969
||||| || |||||| ||||||||||| |||||||||||||| | | ||| ||||
Sbjct 828 AAGGAATCTGAGAAGTTGACATAGACTTCGCCTGAATGAGAAATCAGCTAATCAGTTGTG 887
Query 970 TTCGAATAGTGCCTCCCTGTAATAATATTTGCCAATGCAAAATGTTCCTTGCCATCTTCC 1029
||||| |||||||||| ||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 888 TTCGATTAGTGCCTCCGTGTAATAATGTTTGCTAATGCAAAATGTTCCTTGTCATCTTCA 947
Query 1030 CATTGTTTCTATCATAAAAATTCGACTT-GTTCCTCCACTTTTACTTAATTTGTGAAA 1086
|||||||||||||||||| ||| || || ||||||||||||| ||||| ||| |||||
Sbjct 948 CATTGTTTCTATCATAAATATTAGA-TTCGTTCCTCCACTTTAACTTAGTTTATGAAA 1004
Score = 435 bits (235), Expect = 6e-121
Identities = 274/293 (94%), Gaps = 2/293 (1%)
Strand=Plus/Plus
Query 54 ATCTTTGCTTCT-CAGACAATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACC 112
|||||||||||| || |||||||||||| ||||| || ||| || ||||||||||||||
Sbjct 3 ATCTTTGCTTCTCCA-ACAATGGCGGCTACTACACAGTTCAAGTCTTGTCTTCTTCAACC 61
Query 113 CAAGTCTGGCTCCACCACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCC 172
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 62 TAAGTCTGGCTCCACCACTCGCCGACTAAACCCTTCTCTCGTTAATCCTCTTACGAATCC 121
Query 173 CACAAGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGA 232
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 122 GACAAGAGTTTCGGTTTTGGGGAAGAGTCGTAGAGATGTGTTTGCGAAAGCTTCGATGGA 181
Query 233 AATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCC 292
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 182 AATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCC 241
Query 293 AATCATCGTGATTGATAATTACGACAGCTTCACATACAATCTCTGCCAGTATA 345
|||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 242 TATCATCGTCATTGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATA 294
> Ahg472860 jgi|Araly1|472860|fgenesh2_kg.1__2814__AT5G57890.1
Length=980
Score = 1035 bits (560), Expect = 0.0
Identities = 612/638 (96%), Gaps = 0/638 (0%)
Strand=Plus/Plus
Query 378 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 330
Query 438 GAAGAGCTGaaaaaaaaaaaTCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTACCCCT 497
|| ||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 331 GAGGAGCTGAAAAATAAAAATCCAAGAGGAGTGTTGATTTCTCCTGGACCTGGTACCCCT 390
Query 498 CAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTT 557
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 391 CAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACGTGTTCCTTTATTT 450
Query 558 GGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCA 617
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GGAGTATGCATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCA 510
Query 618 CCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGAA 677
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 511 CCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTTACTATGATGAGAAAGGAGAAGAA 570
Query 678 GGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGATC 737
|||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 571 GGCTTGTTCTCTGGATTATCCAACCCTTTCCTTGTAGGTAGATATCACAGCCTCGTGATC 630
Query 738 GAAAAAGATACATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTG 797
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAAAAAGATTCATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCTG 690
Query 798 GTAATGGCTGCCCGTCACAGAAAGTACAAGCATATACAGGGAGTCCAATTTCATCCGGAG 857
|| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 691 GTTATGGCTGCCCGTCACAGGAAGTATAAGCATATACAGGGAGTTCAATTTCATCCGGAG 750
Query 858 AGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATAGTAGAGAAA 917
|||||||||||||| || |||||||||||||||||||||||||||||| | |||||||||
Sbjct 751 AGTATTATAACAACCGAAGGCAAGACAATTGTCCGCAATTTCATCAAACTCGTAGAGAAA 810
Query 918 AAGGAGTCCGAGAAGCTGACATAGACTAGCCTGAATGAGAAAATCAGCTGTGTTCGAATA 977
||||| || ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 811 AAGGAATCTGAGAAGCTGACATAGACTAGCCTGAATGAGAAAATCAGCTGTGTTTGATTA 870
Query 978 GTGCCTCCCTGTAATAATATTTGCCAATGCAAAATGTT 1015
|| ||||||||||||||| |||||||||||||||||||
Sbjct 871 GTACCTCCCTGTAATAATGTTTGCCAATGCAAAATGTT 908
Score = 381 bits (206), Expect = 8e-105
Identities = 257/280 (92%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 72 ATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACCCAAGTCTGGCTCCACCACT 131
||||||||| ||||| | ||||| || ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGGCTACTACACTATACAAGTCTTGTCTTCTTCAACCCAAGTCTAGCTCCACCACT 60
Query 132 CGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAGAGTTTCCGTTTTG 191
|| | |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CG--G-CTAAACCCTTCTCTTGTTAACCCTCTTACGAATCCGACAAGAGTTTCGGTTTTG 117
Query 192 GGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCG 251
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 118 GGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCTATTGAAATGGCGGAATCAAATTCG 177
Query 252 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGT------CCAATCATCGTGATT 305
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 178 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTTATGGTCCTATCATCGTGATT 237
Query 306 GATAATTACGACAGCTTCACATACAATCTCTGCCAGTATA 345
|||||||||||||||||||| |||||||||||||||||||
Sbjct 238 GATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATA 277
> Ahg900162 jgi|Araly1|900162|Al_scaffold_0004_812
Length=828
Score = 843 bits (456), Expect = 0.0
Identities = 530/566 (94%), Gaps = 4/566 (1%)
Strand=Plus/Plus
Query 378 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 437
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 265 CAGTATATGGGAGAGCTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAATA 324
Query 438 GAAGAGC-TGaaaaaaaaaaaTCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTACCCC 496
|| |||| || ||| |||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 325 GAGGAGCTTG-AAAGAAAAAATCCAAGAGGGGTATTAATTTCTCCTGGACCTGGTACACC 383
Query 497 TCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATT 556
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 384 TCAAGACTCTGGGATTTCTTTGCAAACCGTTTTGGAACTCGGACCATTTGTTCCTTTATT 443
Query 557 TGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTC 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 TGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGGAAAGATTGTGCGGGC 503
Query 617 ACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATGATGAGAAAGGAGAAGA 676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 504 ACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTACACTATGATGAGAAAGGAGAAGA 563
Query 677 AGGCTTGTTCTCTGGATTATCAAACCCTTTCATTGTAGGTAGATATCACAGTCTCGTGAT 736
|||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| ||
Sbjct 564 AGGCTTGTTCTCTGGACTATCTAACCCTTTCCTTGTAGGTAGATATCACAGCCTCGTTAT 623
Query 737 CGAAAAAGATACATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCT 796
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CGAAAAAAATTCATTTCCTAGTGATGAACTCGAGGTTACAGCATGGACAGAAGATGGTCT 683
Query 797 GGTAATGGCTGCCCGTCACA-GAAAGTACAAGCATATACAGGGAGTCCAATTTCATCCGG 855
||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 684 GGTTATGGCTGCCCGTCACAAGAAA-TACAAGCATATACAGGGAGTTCAATTTCATCCGG 742
Query 856 AGAGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAATTTCATCAAAATAGTAGAGA 915
||||||||||||||||||| ||||| ||||||||| |||| ||||||||| | |||||||
Sbjct 743 AGAGTATTATAACAACTGAAGGCAAAACAATTGTCGGCAACTTCATCAAACTCGTAGAGA 802
Query 916 AAAAGGAGTCCGAGAAGCTGACATAG 941
||||||| || |||||| ||||||||
Sbjct 803 AAAAGGAATCTGAGAAGTTGACATAG 828
Score = 387 bits (209), Expect = 2e-106
Identities = 253/274 (92%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 72 ATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACCCAAGTCTGGCTCCACCACT 131
||||||||| ||||| || ||| || ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGGCTACTACACAGTTCAAGTCTTGTCTTCTTCAACCCAAGTCTAGCTCCACCACT 60
Query 132 CGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAGAGTTTCCGTTTTG 191
||||| |||||||||||||||||||| |||||||||||| | ||||||||||| ||||||
Sbjct 61 CGCCGACTAAACCCTTCTCTCGTTAATCCTCTTACGAATTCGACAAGAGTTTCGGTTTTG 120
Query 192 GGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCG 251
||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 GGGAAGAGTAGTAGAGATGTCTTTGCGAAGGCTTCGATGGAAATGGCGGAATCGAATTCG 180
Query 252 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCCAATCATCGTGATTGATAAT 311
|||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 181 ATACCTTCCGTTGT---CAATTCCTCTAAGCAGAATGGTCCTATCATCGTGATTGATAAT 237
Query 312 TACGACAGCTTCACATACAATCTCTGCCAGTATA 345
|||||||||||||| |||||||||||||||||||
Sbjct 238 TACGACAGCTTCACTTACAATCTCTGCCAGTATA 271
> Ahg484722 jgi|Araly1|484722|fgenesh2_kg.5__714__AT5G57890.1
Length=825
Score = 531 bits (287), Expect = 8e-150
Identities = 428/492 (87%), Gaps = 26/492 (5%)
Strand=Plus/Plus
Query 52 GAATCT-TTGCTTCTCAGACAATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAA 110
|||||| || |||||| |||||||| |||| ||||| ||||||| | ||||||||||||
Sbjct 3 GAATCTATT-CTTCTCCGACAATGGTGGCTACTACACTGTACAAGT-ATGTCTTCTTCAA 60
Query 111 CCCAAGTCTGGCTCCACCACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAAT 170
||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 61 CCCAAGTCTGGTTCCACCACTCACTGCCTAAACCCTTCTCTCGTTAACCCTTTTACGAAT 120
Query 171 CCCACAAGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATT 230
|| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 121 CCGACAAGAGTTTCGGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCAAAAGATTCGATT 180
Query 231 GAAATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGT 290
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 181 GAAATGGCGGAATCGAATTCGACACCTTCCGTTTTTGTCAATTCCTCTAAGCAGAATGGT 240
Query 291 CCAATCATCGTGATTGATAATTACGACAGCTTCACATACAATCTCTGCCAGTATAAACAA 350
| |||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 241 TCTATCATCGTGATTGATAATTACGACAGCTTCGCTTACAATCTCTGCCA-TATTT---- 295
Query 351 AATTTTGAGAATTGTTATCTATTTCTACAGTATATGGGAGAGCTAGGATGCC-ATTTTGA 409
|||| | | || || | |||| || || | | | || |||||||||| |||| ||
Sbjct 296 --TTTTCA-A-TT-TT-T-TATT-CT---GT-T-TCG-AG--CTAGGATGCCGATTT-GA 338
Query 410 AGTTTACCGCAATGATGAACTTACAGTAGAAGAGCTGaaaaaaaaaaaTCCAAGAGGGGT 469
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 339 AGTTTACCGCAATTATGAACTTACAGTAGAGGAGCTGAAAAATAAAAATCCAAGAGTAAT 398
Query 470 GTTGATTTCTCCAGGGCCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTT 529
|||||||||||| || |||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 399 GTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTTCTTTCAAACAGTTTT 458
Query 530 GGAACTCGGACC 541
| |||| |||||
Sbjct 459 GAAACTTGGACC 470
Score = 442 bits (239), Expect = 4e-123
Identities = 319/357 (89%), Gaps = 7/357 (2%)
Strand=Plus/Plus
Query 586 GAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCT 645
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 475 GAGAAGCATTTAGAGGAAAGATTGTGCGGTCACTATTTGGTGTTATGCATGGGAAAAGCT 534
Query 646 CAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCAAACCCTT 705
|||||||||||||||||||||||||| || || |||| | | | | || | |||||
Sbjct 535 CAATGGTTCACTATGATGAGAAAGGAAAATAATGCTT-AT-T-T-GTTTGT-GTTCCCTT 589
Query 706 TCATTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATACATTTCCTAGTGATGAAC 765
|| ||||| ||||||||||||| ||||| |||||||||||| |||| ||||||| |||||
Sbjct 590 TCTTTGTAAGTAGATATCACAGCCTCGTCATCGAAAAAGATTCATTCCCTAGTGGTGAAC 649
Query 766 TCGAGGTTACAGCATGGACAGAAGATGGTCTGGTAATGGCTGCCCGTCACA-GAAAGTAC 824
||||||||||||||||||||| |||||||||||| |||||| || |||||| | |||||
Sbjct 650 TCGAGGTTACAGCATGGACAGCAGATGGTCTGGTTATGGCTTCCTGTCACATG-AAGTAT 708
Query 825 AAGCATATACAGGGAGTCCAATTTCATCCGGAGAGTATTATAACAACTGAGGGCAAGACA 884
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 709 AAGCATATACAAGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAGACA 768
Query 885 ATTGTCCGCAATTTCATCAAAATAGTAGAGAAAAAGGAGTCCGAGAAGCTGACATAG 941
|||||| |||||||||||||| | |||||||||||||| || |||||||||||||||
Sbjct 769 ATTGTCTGCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGACATAG 825
> Ahg484723 jgi|Araly1|484723|fgenesh2_kg.5__715__AT1G25220.1
Length=933
Score = 496 bits (268), Expect = 3e-139
Identities = 368/416 (88%), Gaps = 7/416 (2%)
Strand=Plus/Plus
Query 601 GAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATG 660
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 493 GAAAGATTGTGCGGTCACTATTTGGTGTTATGCATAGGAAAAGCTCAATGGTTCACTATG 552
Query 661 ATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCAAACCCT-TTCAT-TG-TAGGTA 717
||||||||||| || || ||||||||||| ||||||| || | | || | | ||
Sbjct 553 ATGAGAAAGGAAAATAATGCTTGTTCTCTAGATTATCCAA--GTATAAATCAGATTTGTT 610
Query 718 GATATCACAGTCTCGTGATCGAAAAAGATACATTTCCTAGTGATGAACTCGAGGTTACAG 777
||||||||| ||||| |||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 611 TATATCACAGCCTCGTCATCGAAAAAGATTCATTCCCTAGTGGTGAACTCGAGGTTACAG 670
Query 778 CATGGACAGAAGATGGTCTGGTAATGGCTGCCCGTCACA-GAAAGTACAAGCATATACAG 836
||||||||| |||||||||||| |||||| || |||||| ||| ||| | |||||||||
Sbjct 671 CATGGACAGCAGATGGTCTGGTTATGGCTTCCTGTCACATGAA-GTATAGGCATATACAA 729
Query 837 GGAGTCCAATTTCATCCGGAGAGTATTATAACAACTGAGGGCAAGACAATTGTCCGCAAT 896
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 730 GGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAGACAATTGTCTGCAAT 789
Query 897 TTCATCAAAATAGTAGAGAAAAAGGAGTCCGAGAAGCTGACATAGACTAGCCTGAATGAG 956
||||||||| | |||||||||||||| || |||||||||||||||||||| ||| |||||
Sbjct 790 TTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGACATAGACTAGTCTGGATGAG 849
Query 957 AAAATCAGCTGTGTTCGAATAGTGCCTCCCTGTAATAATATTTGCCAATGCAAAAT 1012
||||||||||||||| || |||| ||||||||||||||| | ||||||||||||||
Sbjct 850 AAAATCAGCTGTGTTTGATTAGTTCCTCCCTGTAATAATGTCTGCCAATGCAAAAT 905
Score = 442 bits (239), Expect = 4e-123
Identities = 367/425 (86%), Gaps = 23/425 (5%)
Strand=Plus/Plus
Query 178 GAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGG 237
||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 56 GAGTTTCGGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCAAAAGATTCGATTGAAATGG 115
Query 238 CGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCCAATCA 297
||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| | ||||
Sbjct 116 CGGAATCGAATTCGACACCTTCTGTTTTTGTCAATTCCTCTAAGCAGAATGGTTCTATCA 175
Query 298 TCGTGATTGATAATTACGACAGCTTCACATACAATCTCTGCCAGTATAAACAAAATTTTG 357
|||||||||||||||||||||||||| | |||||||||||||| ||| ||||
Sbjct 176 TCGTGATTGATAATTACGACAGCTTCGCTTACAATCTCTGCCA-TAT--------TTTTT 226
Query 358 AGAATTGTTATCTATTTCTACAGTATATGGGAGAGCTAGGATGCC-ATTTTGAAGTTTAC 416
|||| || | ||||| | || | | | | | |||||||| | ||||||||||||
Sbjct 227 TCAATT-TT-T-TATTT-T---GT-T-T-CG-G-TCAAGGATGCCGA-TTTGAAGTTTAC 273
Query 417 CGCAATGATGAACTTACAGTAGAAGAGCTGaaaaaaaaaaaTCCAAGAGGGGTGTTGATT 476
|||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 274 CGCAATTATGAACTTACAGTAGAGGAGCTGAAAAATAAAAATCCAAGAGTAATGTTGATT 333
Query 477 TCTCCAGGGCCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTC 536
||||| || |||||||||||||||||||||||||||| ||| ||||| |||||| ||||
Sbjct 334 TCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTTCTTTCAAACAGTTTTGAAACTT 393
Query 537 GGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTT 596
||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 394 GGACCTCGTGTTTCTTTATTTGGAGTATGTATGAATTTGCAGTGTATAGGAGAAGCATTT 453
Query 597 GGAGG 601
|||||
Sbjct 454 GGAGG 458
Score = 91.6 bits (49), Expect = 2e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 99 TGTCTTCTTCAACCCAAGTCTGGCTCCACCACTCGCCGCCTAAACCCTTCTCTCG 153
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2 TGTCTTCTTCAACCCAAGTCTGGCTCCACCACTCACTGCCTAAACCCTTCTCTCG 56
> Ahg887377 jgi|Araly1|887377|Al_scaffold_0358_2
Length=429
Score = 398 bits (215), Expect = 8e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 72 ATGGCGGCTTCTACATTGTACAAATCCTGTCTTCTTCAACCCAAGTCTGGCTCCACCACT 131
||||||||| ||||| |||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCTACTACACAGTACAAGTCTTGTCTTCTTCAACCTAAGTCTGGCTCCACCACT 60
Query 132 CGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAGAGTTTCCGTTTTG 191
||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct 61 CGCCGACTAAACCCTTCTCTCGTTAATCCTCTTACGAATCCGAC---AGTTTCGGTTTTG 117
Query 192 GGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCG 251
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 118 GGGAAGAGTCGTAGAGATGTGTTTGCGAAAGCTTCGATGGAAATGGCGGAATCGAATTCG 177
Query 252 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGCATGGTCCAATCATCGTGATTGATAAT 311
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 178 ATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTCATTGATAAT 237
Query 312 TACGACAGCTTCACATACAATCTCTGCCAGTATA 345
|||||||||||||| |||||||||||||||||||
Sbjct 238 TACGACAGCTTCACTTACAATCTCTGCCAGTATA 271
Score = 165 bits (89), Expect = 9e-40
Identities = 107/115 (93%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 378 CAGTATATGGGAGAGCTAGGATGCCATTTTGAAGTTTACCGCAATGATGAACTTACAGTA 437
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 CAGTATATGGGAGAGCTAGGATGCCATTTCGAAGTTTACCGCAATGATGAACTTACAGTA 324
Query 438 GAAGAGCTGaaaaaaaaaaaTCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGGTA 492
|| |||||||||||||| |||||||||||| ||||||||||| || |||||||
Sbjct 325 GAGGAGCTGAAAAAAAA---TCCAAGAGGGGTATTGATTTCTCCTGGACCTGGTA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5