BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25230.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472858 jgi|Araly1|472858|fgenesh2_kg.1__2812__AT1G25230.1 1698 0.0
> Ahg472858 jgi|Araly1|472858|fgenesh2_kg.1__2812__AT1G25230.1
Length=1042
Score = 1698 bits (919), Expect = 0.0
Identities = 1001/1042 (96%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 13 GAACAGAATGAGTTCTAAGTTTGATATCGGCTCCTTAAGCATAGTAATGACTCTGCTTAT 72
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1 GAACAGAATGTGTTCTAAGTTTGATATCGGCTCCTTGAGCATAGTAATGACTCTGCTTCT 60
Query 73 TTGCTTCTTATTATTATCTTTGGCTCCAAAACTTGAGGCTGAGCTCGCAACGGTCCAACA 132
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 61 CTGCTTCTTATTATTATCTTTGGCACCAAAACTTGAGGCCAAGCTCGCAACGGTCGAACA 120
Query 133 TGCTCCAAACCCCGATGGCTCTATCAGTTTTCTGGTGATTGGAGATTGGGGTAGGCATGG 192
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TGCTCCAAACCCTGATGGCTCTATCAGTTTTCTGGTGATTGGAGATTGGGGTAGGCGTGG 180
Query 193 ACTCTACAACCAATCCCAAGTTGCCCTCCAGATGGGGAGAATCGGGGAGGAGATGGATAT 252
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ACTCTATAACCAATCCCAAGTTGCCCTCCAGATGGGGATAATCGGGGAGGAGATGGATAT 240
Query 253 CAATTTTGTGGTATCGACGGGTGATAACATCTACGATAACGGGATGAAAAGTATCGATGA 312
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CGATTTTGTGGTATCGACGGGTGATAACATCTACGATAACGGGATGAAAAGCATCGATGA 300
Query 313 TCCCGCCTTTCAACTCTCCTTTAGTAATATCTACACTTCTCCTAGCCTGCAAAAGCCTTG 372
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCCGCCTTTCAACTCTCCTTCAGTAATATCTACACTTCTCCTAGCCTGCAAAAGCCTTG 360
Query 373 GTACCTTGTATTGGGGAATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTAT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTACCTTGTATTGGGGAATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTAT 420
Query 433 CCTCAGATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGAGAT 492
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 CCTCAGATCTATGGACAGCCGTTGGATTTGCATGAGATCTTTCATCGTTGACGCTGAGAT 480
Query 493 CGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAGTCCACA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAATCCACA 540
Query 553 AGACCAAACTTACGACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTT 612
|||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 541 AGACCAAACTTATGACTGGAGTGGCGTATCACCGCGAGAATCCTATCTTCAGACCATCTT 600
Query 613 AACGGAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTGGGTCA 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 AACGGAGTTGGAGATGGGTCTAAGAGAATCAAGAGCAAAATGGAAAATTGTGGTGGGTCA 660
Query 673 CCATGCTATAAAGAGTGCTTCCATTCATGGGAATACCAAAGAGCTTGAATCTCTCCTCTT 732
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 CCATGCTATAAAGAGTGCTTCCATTCATGGGAATACCAAAGAACTTGAATCTCTCCTCTT 720
Query 733 ACCCATCCTTGAGGCGAATAAAGTTGATCTCTATATGAACGGTCATGATCATTGCTTGCA 792
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 721 ACCCATCCTTGAGGCGAATAAAGTCGATCTCTATATGAATGGTCATGATCATTGCTTGCA 780
Query 793 ACATATAAGCACATCACAAAGCCCAATTCAGTTTCTAACGAGTGGTGGTGGGTCAAAGGC 852
||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 781 ACAGATAAGCACATCTCAAAGTCCAATTCAGTTTTTAACGAGTGGTGGTGGGTCAAAGGC 840
Query 853 ATGGAGAGGCTATTACAATTGGACAACACCAGAGGATATGAAATTTTTCTACGATGGACA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGGAGAGGCTATTACAATTGGACAACACCAGAGGATATGAAATTTTTCTACGATGGACA 900
Query 913 AGGTTTCATGTCAGTTAAGATCACTAGATCAGAATTGAGTGTCGTTTTTTATGATGTCTC 972
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AGGTTTCATGTCAGTTAAAATCACTAGATCAGAAATGAGTGTCGTTTTTTATGATGTCTT 960
Query 973 CGGCAATAGTTTGCATAAGTGGGACACATCGAAAATGTTAGACTCGGATTTTTATTTCCC 1032
|||||| | |||||| || ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 961 CGGCAACATTTTGCACAAATGGGACACATCAAAAATGTTAGACACAGATTTTTATTTCCC 1020
Query 1033 ATTGTAATTCACATGAAAATCA 1054
||||||||||||||| ||||||
Sbjct 1021 ATTGTAATTCACATGGAAATCA 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5