BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25240.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921700 jgi|Araly1|921700|scaffold_102981.1 1923 0.0
> Ahg921700 jgi|Araly1|921700|scaffold_102981.1
Length=1172
Score = 1923 bits (1041), Expect = 0.0
Identities = 1117/1154 (97%), Gaps = 4/1154 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTGTGGAAACGGGCTTCCGGTGCTCTCAAAGACCGGAAAACCTTGTTTACCATC 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 21 ATGAAGCTGTGGAAGCGGGCTTCCGGTGCTCTCAAAGACCGGAAAACCTTGTTTTCCATC 80
Query 61 GGCTTCTCCCGGAAAACCTCCTTCCGCAACCCTGACCTTGATTCTGCCATCATCCACGCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 81 GGCTTCTCCCGGAAAACCTCCTTCCGCAACCCTGACCTTGATTCTGCCATCATCTACGCA 140
Query 121 ACCTCTCACGATGACTCATCTGTCGATTACCACAATGCTCACCGTGTCTACAAATGGATC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 ACCTCTCACGATGACTCATCTGTCGATTACCACAATGCTCATCGTGTCTACAAATGGATC 200
Query 181 CGGTCCTCTCCCGCCAATCTCAAGCCGCTTGTTCATGCTCTTTCATCTAGGGTTAACCGC 240
|| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||
Sbjct 201 CGATCCTCTCCCGCCAATCTCAAGCCGCTTGTTCATGCCCTTTCGTCTCGGGTAAACCGC 260
Query 241 ACAAGAAGCTGGATTGTAGCCTTGAAAGCCTTAATGCTTGTCCACGGTGTGCTTTGCTGC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ACAAGAAGCTGGATTGTTGCCTTGAAAGCCTTAATGCTTGTCCACGGTGTGCTTTGCTGC 320
Query 301 AAAGTCACGTCCCTTCAAGAAATTCGTCGCCTCCCTTTCGATCTCTCGGATTTCTCGGAT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 AAAGTCACGTCCCTTCAAGAAATTCGTCGCCTCCCTTTCGACCTCTCGGATTTCTCGGAT 380
Query 361 GGTCATTCCCGTCCCAGCAAAACTTGGGGTTTCAACGCTTTTATCCGCGCCTATTTCTCG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGTCATTCCCGTCCCAGCAAGACTTGGGGTTTCAACGCTTTTATCCGCGCCTATTTCTCG 440
Query 421 TTTCTTGACCAGTACTCTTTCTTTTTATCCGATCAAATCCGTCGTCGCCACAAAAAACCT 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 441 TTTCTTGACCAGTACTCTTTCTTTTTATCGGATCAAATCCGTCGTCGCCACAAAAAACCT 500
Query 481 CAGCTAGATTCGGTTAACCAAGAGCTCGAAAGAATCGAGAAACTTCAGTCTCTTCTCCAT 540
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 501 CAGCTAGATTCGGTTAACCAAGAGCTCGAAAGGATCCAGAAACTTCAGTCTCTTCTCCAT 560
Query 541 ATGCTTCTCCAGATCCGTCCAATGGCTGACAACATGAAGAAGACGCTTATCCTTGAAGCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATGCTTCTCCAGATCCGTCCAATGGCTGACAACATGAAGAAGACGCTTATCCTTGAAGCC 620
Query 601 ATGGACTGCGTGGTGATCGAGATCTTCGACATTTATGGAAGAATATGTAGCGCTATCGCC 660
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 621 ATGGACTGCGTGGTGATCGAGATCTTTGACATTTATGGAAGAATCTGTAGCGCTATCGCC 680
Query 661 AAGCTTCTCATCAAA-ATCCATCCAGCTGCTGGAAAAGCAGAAGCTGTGATTGCTCTTAA 719
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAGCTTCTCAT-AAAGATCCATCCAGCTGCTGGAAAAGCAGAAGCTGTGATTGCTCTTAA 739
Query 720 GATTGTAAAGAAGGCTACATCTCAAGGAGAAGATCTCGCACTCTACTTTGAATTCTGCAA 779
| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 740 GGTTGTAAAGAAGGCTACATCTCAAGGAGAAGATCTCGCCCTCTACTTTGAGTTCTGCAA 799
Query 780 AGAATTTGGGGTCTCAAACGCGCACGACATTCCTAAATTCGTGACAATCCCGGAAGAAGA 839
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 800 AGAATTTGGGGTCTCAAACGCGCACGAAATTCCTAAATTCGTTAGAATCCCGGAAGAAGA 859
Query 840 CATTAAAGCAATCGAGAAAGTCATCAATGGAGTAGAAGAAGAAGAGGTGaaaaaaaaGGA 899
||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 860 CATTAAAGCAATCGAGAAAGTCATCAATGGAGTTGAAGAAGAAGAGGAGACCAAAAAGGA 919
Query 900 AGATG-AAGTAGAGGAAGAGAAGAGTATCATATTAGTGGAGAGACCGGAGTTGCAGACAA 958
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGA-GCAAGTAGAGGAAGAGAAGAGTATCATATTAGTGGAGAGACCGGAGTTGCAGACAA 978
Query 959 TCATAACCGATAAATGGGAAATTTTCGAAGACGACTTTTGTTTCACATGTAAGGATATTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TCATAACCGATAAATGGGAAATTTTCGAAGACGACTTTTGTTTCACATGTAAGGATATTA 1038
Query 1019 AAGAAACTGATCAGCATAGAAAGTTTAACATGGATCCGAGTCCGCTGCCTCTAATAGTTA 1078
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1039 AAGAAACTGATCAGCATAGAAAATGTAACGTGGATCCGAGTCCGCTGCCTCTAATAGTTA 1098
Query 1079 TCGACGAGCCAGTTTACTTCACTCACACGTTACCAGATTTGATTACCTTCTAATTGCAAC 1138
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1099 TGGACGAGCCAGTTTACTTCACTCACACGTTACCAGATTTGATTACCTTTTAATTGCGAC 1158
Query 1139 TTGATCAGATTCAT 1152
||||||||||||||
Sbjct 1159 TTGATCAGATTCAT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5