BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25250.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912489 jgi|Araly1|912489|Al_scaffold_0001_2743 1622 0.0
Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1 468 5e-131
> Ahg912489 jgi|Araly1|912489|Al_scaffold_0001_2743
Length=1158
Score = 1622 bits (878), Expect = 0.0
Identities = 1022/1091 (94%), Gaps = 11/1091 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCT-GACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGA 59
|||||| | ||||| ||||| ||||||||||| |||||||||||| || | ||||
Sbjct 77 ATGGAG-TCGACGCGACCCAAAAGAGAAAACGAAGACCCGCAGGG-----AG--ACCAGA 128
Query 60 TCCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGT 119
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 129 TCCAGATGCAGAGGTGGTATCTTTATCACCAAGGACGTTGCTAGAGTCAGATCGGTACGT 188
Query 120 GTGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACG 179
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct 189 GTGTGAGATCTGCAACCAAGGGTTTCAAAGGGATCAGAATTTACAGATGCATAGAAGAAG 248
Query 180 ACATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GCATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 308
Query 240 AGTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGA 299
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct 309 AGTCTACGTGTGTCCTGAGCCAACATGTCTTCACCACGATCCGTGTCACGCCCTTGGAGA 368
Query 300 TCTGGTCGGAATCAAAAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 369 TCTGGTCGGAATCAAAAAGCACTTCCGCCGGAAACATAGTGTTCACAAGCAATGGGTTTG 428
Query 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 429 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACTTG 488
Query 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479
|| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 489 TGGCTCACGCGGTCACTCCTGTGACTGTGGCCGCGTTTTCTCCAGGGTTGAGTGTTTCAT 548
Query 480 AGAGCATCAAGATACTTGCACCATCCGGCAACCTCAACCCACCAACCACCGTCATCTACA 539
|||||||||||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||
Sbjct 549 AGAGCATCAAGATACTTGCAACATCCGGGAACCTCCACCCACCAATCACCGTCCTCTACA 608
Query 540 GCAGCACACGATGGGCCTTGACGCTCCATCAAGAACCACTTCGAC-AGCAAGCTTCGGCC 598
||||||||||| |||||||| |||||||||||||||||||||||| | ||||||| ||||
Sbjct 609 GCAGCACACGACGGGCCTTGCCGCTCCATCAAGAACCACTTCGACCA-CAAGCTTTGGCC 667
Query 599 CTTTATTGCATGGACTTCCTTTGTTAAGACCTCCACGACCGTCCAATCAACATTCACCAG 658
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 668 CTTTATTGCATGGACTTCCTTTGTTACGTCCACCACGACCGTCCAATCAACATTCACCAG 727
Query 659 CTTTTGCTTACCCTTTCAATGCTTCATCAGCTCCTTTCGAAAGCCTCGAACTTCAACTAT 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 728 CTTTTGCTTACCCTTTCAATGCTTCATCAACTCCTTTCGAAAGCCTCGAACTTCAACTAT 787
Query 719 CCATAGGAATGGCAAGAACATCAGCACAAGCGAGGCACAACGAAAAGAGAGAGACGAGTT 778
||||||||||||| ||||||||||||||||| | || |||||||||| ||||||||||||
Sbjct 788 CCATAGGAATGGCGAGAACATCAGCACAAGCAAAGCGCAACGAAAAGGGAGAGACGAGTT 847
Query 779 TAACAAAGGAGAGAGCGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGCGA 838
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 848 TCACCAAGGAGAGAGTGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGTTA 907
Query 839 AAAGGCAGATAGAGATGGCAGAAAAGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAAG 898
||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
Sbjct 908 AAAGGCAGATAGAGATGGCGGAGAGGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAGG 967
Query 899 CAAAAACCGAGTTGGAGAAGGCTCACGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 958
| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 968 CGAAAACCGAGCTGGAGAAGGCTCAGGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 1027
Query 959 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTATTTCAGCTGCCTGTTACGG 1018
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1028 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTGTTTCAGCTGCCTGTTATGG 1087
Query 1019 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1147
Query 1079 AATGCGAGTGA 1089
|||| ||||||
Sbjct 1148 AATGTGAGTGA 1158
> Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1
Length=1709
Score = 468 bits (253), Expect = 5e-131
Identities = 442/533 (83%), Gaps = 14/533 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCTGACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGAT 60
||||||| | || || || ||| | |||||||||||||| |||||||| | |||
Sbjct 334 ATGGAGCCGCCGTGACACAGAAGCGCAAACGGAGACCCGCCGGGACACC-G------GAT 386
Query 61 CCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGTG 120
|| || || ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 387 CCGGAGGCGGAGGTAGTATCTTTATCTCCAAGAACGTTACTAGAATCGGATCGGTACGTA 446
Query 121 TGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACGA 180
||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 447 TGTGAGATCTGTAACCAAGGGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGA 506
Query 181 CATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAGA 240
|||||||| |||||||||||||| || ||||| | || || | | |||| || ||||||
Sbjct 507 CATAAAGTTCCATGGAAGCTTCTAAAAAGAGAGACCAACGA-G-G-AAGTAAGAAAGAGA 563
Query 241 GTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGAT 300
|||||||| ||||| ||||| |||||||| ||||| |||| || ||||| || ||||||
Sbjct 564 GTCTACGTCTGTCCGGAGCCGACATGTCTTCACCACAACCCTTGTCACGCGCTCGGAGAT 623
Query 301 CTGGTCGGAATCAA-AAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359
|| || |||||||| ||| ||||| || || ||||| ||| ||| ||||||||| | ||
Sbjct 624 CTCGTGGGAATCAAGAAA-CACTTTCGACGGAAACATAGTAACCATAAGCAATGGATCTG 682
Query 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419
|||| ||||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct 683 CGAGCGATGCTCAAAAGGCTACGCCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTG 742
Query 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479
|| | ||||| |||||||| ||||| ||||| ||||| ||||| || |||||||||||
Sbjct 743 TGGCACTCGCGGCCACTCCTGTGACTGCGGCCGAGTTTTTTCCAGAGTGGAGAGTTTCAT 802
Query 480 AGAGCATCAAGATACTTGCACCATCCGGCAA-CCTCAACCCACCAACCACCGT 531
|||||| ||||| | ||||||| | || | | || |||||| |||||||||||
Sbjct 803 AGAGCACCAAGACAATTGCACCGTACGACGATCC-CAACCCTCCAACCACCGT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5