BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25250.1 Length=1181 Score E Sequences producing significant alignments: (Bits) Value Ahg912489 jgi|Araly1|912489|Al_scaffold_0001_2743 1622 0.0 Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1 468 5e-131 > Ahg912489 jgi|Araly1|912489|Al_scaffold_0001_2743 Length=1158 Score = 1622 bits (878), Expect = 0.0 Identities = 1022/1091 (94%), Gaps = 11/1091 (1%) Strand=Plus/Plus Query 1 ATGGAGCT-GACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGA 59 |||||| | ||||| ||||| ||||||||||| |||||||||||| || | |||| Sbjct 77 ATGGAG-TCGACGCGACCCAAAAGAGAAAACGAAGACCCGCAGGG-----AG--ACCAGA 128 Query 60 TCCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGT 119 |||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 129 TCCAGATGCAGAGGTGGTATCTTTATCACCAAGGACGTTGCTAGAGTCAGATCGGTACGT 188 Query 120 GTGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACG 179 ||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| | Sbjct 189 GTGTGAGATCTGCAACCAAGGGTTTCAAAGGGATCAGAATTTACAGATGCATAGAAGAAG 248 Query 180 ACATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 GCATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 308 Query 240 AGTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGA 299 |||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 309 AGTCTACGTGTGTCCTGAGCCAACATGTCTTCACCACGATCCGTGTCACGCCCTTGGAGA 368 Query 300 TCTGGTCGGAATCAAAAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 369 TCTGGTCGGAATCAAAAAGCACTTCCGCCGGAAACATAGTGTTCACAAGCAATGGGTTTG 428 Query 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 429 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACTTG 488 Query 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479 || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 489 TGGCTCACGCGGTCACTCCTGTGACTGTGGCCGCGTTTTCTCCAGGGTTGAGTGTTTCAT 548 Query 480 AGAGCATCAAGATACTTGCACCATCCGGCAACCTCAACCCACCAACCACCGTCATCTACA 539 |||||||||||||||||||| ||||||| |||||| ||||||||| ||||||| |||||| Sbjct 549 AGAGCATCAAGATACTTGCAACATCCGGGAACCTCCACCCACCAATCACCGTCCTCTACA 608 Query 540 GCAGCACACGATGGGCCTTGACGCTCCATCAAGAACCACTTCGAC-AGCAAGCTTCGGCC 598 ||||||||||| |||||||| |||||||||||||||||||||||| | ||||||| |||| Sbjct 609 GCAGCACACGACGGGCCTTGCCGCTCCATCAAGAACCACTTCGACCA-CAAGCTTTGGCC 667 Query 599 CTTTATTGCATGGACTTCCTTTGTTAAGACCTCCACGACCGTCCAATCAACATTCACCAG 658 |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| Sbjct 668 CTTTATTGCATGGACTTCCTTTGTTACGTCCACCACGACCGTCCAATCAACATTCACCAG 727 Query 659 CTTTTGCTTACCCTTTCAATGCTTCATCAGCTCCTTTCGAAAGCCTCGAACTTCAACTAT 718 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 728 CTTTTGCTTACCCTTTCAATGCTTCATCAACTCCTTTCGAAAGCCTCGAACTTCAACTAT 787 Query 719 CCATAGGAATGGCAAGAACATCAGCACAAGCGAGGCACAACGAAAAGAGAGAGACGAGTT 778 ||||||||||||| ||||||||||||||||| | || |||||||||| |||||||||||| Sbjct 788 CCATAGGAATGGCGAGAACATCAGCACAAGCAAAGCGCAACGAAAAGGGAGAGACGAGTT 847 Query 779 TAACAAAGGAGAGAGCGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGCGA 838 | || |||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 848 TCACCAAGGAGAGAGTGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGTTA 907 Query 839 AAAGGCAGATAGAGATGGCAGAAAAGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAAG 898 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| | Sbjct 908 AAAGGCAGATAGAGATGGCGGAGAGGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAGG 967 Query 899 CAAAAACCGAGTTGGAGAAGGCTCACGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 958 | ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 968 CGAAAACCGAGCTGGAGAAGGCTCAGGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 1027 Query 959 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTATTTCAGCTGCCTGTTACGG 1018 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1028 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTGTTTCAGCTGCCTGTTATGG 1087 Query 1019 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1147 Query 1079 AATGCGAGTGA 1089 |||| |||||| Sbjct 1148 AATGTGAGTGA 1158 > Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1 Length=1709 Score = 468 bits (253), Expect = 5e-131 Identities = 442/533 (83%), Gaps = 14/533 (3%) Strand=Plus/Plus Query 1 ATGGAGCTGACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGAT 60 ||||||| | || || || ||| | |||||||||||||| |||||||| | ||| Sbjct 334 ATGGAGCCGCCGTGACACAGAAGCGCAAACGGAGACCCGCCGGGACACC-G------GAT 386 Query 61 CCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGTG 120 || || || ||||| |||||||| || |||||||||||||||||||| ||||||||||| Sbjct 387 CCGGAGGCGGAGGTAGTATCTTTATCTCCAAGAACGTTACTAGAATCGGATCGGTACGTA 446 Query 121 TGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACGA 180 ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 447 TGTGAGATCTGTAACCAAGGGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGA 506 Query 181 CATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAGA 240 |||||||| |||||||||||||| || ||||| | || || | | |||| || |||||| Sbjct 507 CATAAAGTTCCATGGAAGCTTCTAAAAAGAGAGACCAACGA-G-G-AAGTAAGAAAGAGA 563 Query 241 GTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGAT 300 |||||||| ||||| ||||| |||||||| ||||| |||| || ||||| || |||||| Sbjct 564 GTCTACGTCTGTCCGGAGCCGACATGTCTTCACCACAACCCTTGTCACGCGCTCGGAGAT 623 Query 301 CTGGTCGGAATCAA-AAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359 || || |||||||| ||| ||||| || || ||||| ||| ||| ||||||||| | || Sbjct 624 CTCGTGGGAATCAAGAAA-CACTTTCGACGGAAACATAGTAACCATAAGCAATGGATCTG 682 Query 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419 |||| ||||||| |||||||| || ||||||||||| |||||||| |||||||| ||||| Sbjct 683 CGAGCGATGCTCAAAAGGCTACGCCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTG 742 Query 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479 || | ||||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 743 TGGCACTCGCGGCCACTCCTGTGACTGCGGCCGAGTTTTTTCCAGAGTGGAGAGTTTCAT 802 Query 480 AGAGCATCAAGATACTTGCACCATCCGGCAA-CCTCAACCCACCAACCACCGT 531 |||||| ||||| | ||||||| | || | | || |||||| ||||||||||| Sbjct 803 AGAGCACCAAGACAATTGCACCGTACGACGATCC-CAACCCTCCAACCACCGT 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44070092052 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5