BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25260.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920671 jgi|Araly1|920671|scaffold_101952.1 117 2e-25
Ahg352483 jgi|Araly1|352483|fgenesh1_pg.C_scaffold_6003076 104 1e-21
Ahg943361 jgi|Araly1|943361|scaffold_603905.1 99.0 6e-20
Ahg937876 jgi|Araly1|937876|scaffold_502067.1 99.0 6e-20
> Ahg920671 jgi|Araly1|920671|scaffold_101952.1
Length=462
Score = 117 bits (63), Expect = 2e-25
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 302 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAA 361
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTGCTGCTTCTGATGAA 60
Query 362 CTCCGTTCTGGTATCTACAAAGTCTCCAAGC 392
|| ||| |||||||||||| ||||||||||
Sbjct 61 TTCTGTTATGGTATCTACAA-GTCTCCAAGC 90
> Ahg352483 jgi|Araly1|352483|fgenesh1_pg.C_scaffold_6003076
Length=438
Score = 104 bits (56), Expect = 1e-21
Identities = 83/94 (88%), Gaps = 10/94 (11%)
Strand=Plus/Plus
Query 299 AAGTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGAT 358
|||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 121 AAGTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGT---G-A-----T 171
Query 359 GAACTCCGTTCTGGTATCTACAAAGTCTCCAAGC 392
||| ||||||||||||||||||| ||||||||||
Sbjct 172 GAATTCCGTTCTGGTATCTACAA-GTCTCCAAGC 204
> Ahg943361 jgi|Araly1|943361|scaffold_603905.1
Length=495
Score = 99.0 bits (53), Expect = 6e-20
Identities = 80/91 (88%), Gaps = 10/91 (11%)
Strand=Plus/Plus
Query 302 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAA 361
||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGT---G-A-----TGAA 51
Query 362 CTCCGTTCTGGTATCTACAAAGTCTCCAAGC 392
||||||||||||||||||| ||||||||||
Sbjct 52 TTCCGTTCTGGTATCTACAA-GTCTCCAAGC 81
> Ahg937876 jgi|Araly1|937876|scaffold_502067.1
Length=495
Score = 99.0 bits (53), Expect = 6e-20
Identities = 80/91 (88%), Gaps = 10/91 (11%)
Strand=Plus/Plus
Query 302 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAA 361
||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGT---G-A-----TGAA 51
Query 362 CTCCGTTCTGGTATCTACAAAGTCTCCAAGC 392
||||||||||||||||||| ||||||||||
Sbjct 52 TTCCGTTCTGGTATCTACAA-GTCTCCAAGC 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5