BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G25280.1

Length=2112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896941 jgi|Araly1|896941|Al_scaffold_0005_907                    67.6    4e-10


> Ahg896941 jgi|Araly1|896941|Al_scaffold_0005_907
Length=516

 Score = 67.6 bits (36),  Expect = 4e-10
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  487  GTGAGTGGAGTCTCTCATCTTAGTCTGAAGCTCttt  522
            ||||||||||||||||||||||||||||||||||||
Sbjct  16   GTGAGTGGAGTCTCTCATCTTAGTCTGAAGCTCTTT  51



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 79456251070


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5