BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25375.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313393 jgi|Araly1|313393|fgenesh1_pm.C_scaffold_1002173 2346 0.0
> Ahg313393 jgi|Araly1|313393|fgenesh1_pm.C_scaffold_1002173
Length=2343
Score = 2346 bits (1270), Expect = 0.0
Identities = 1421/1495 (95%), Gaps = 6/1495 (0%)
Strand=Plus/Plus
Query 38 ATGGGAAATCTGAAACTTGCTTTGATCATCAAGAGCCCTAGAGACGACGTTGAGTTCCTA 97
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAATCTGAAACTTGCTTTGATCATCAAGAACCCTAGAGACGACGTTGAGTTCCTG 60
Query 98 CTCGAGAAGCAAAAACAGCCGGCGAAATTTGGAGATGAAGCTTACGATTCCTTTGTCGAT 157
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCGAGAAGCAAAAACAGCCGGCGAAATTTGGAGATGAAGCTTATGATTCCTTTGTCGAT 120
Query 158 TCCGATCTCTGGGACTTACCGTCAACAGATTTACAGGCTCTGGAAGACGGAGTGAGGTCC 217
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 121 TCCGATCTCTGGGACTTACCGTCAACAGATTTACTGGCTTTGGAAGACGGAGTCAGGTCC 180
Query 218 GGATTTAGTATTTCTATACTTGACTCATGCTCGGAGGAGGTTGATTTGATGAATTTCGAC 277
||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 181 GGATTTAGTATCTCTATACTTGAATCATGTTCTGAGGAGGTTGATTTGATGAATTTCGAC 240
Query 278 TTCGAATCCACACTGATTCTGCTGCTGGAGAATTTAGGGATTGATATTAGCGATGTAGGA 337
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 241 TTCGAATCCACACTGATTCTGCTGTTGGCGAATTTAGGGATTGGTATTAGCGATGTAGGA 300
Query 338 GAGTGGAGATTCGTCAGGTCTGTAGAAGAGCCTGAGTTTGGACCTGACTCTTGTGTCCGT 397
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAGTGGAGATTTGTCAGGTCTGTAGAAGAGCCTGAGTTTGGACCTGACTCTTGCGTCCGT 360
Query 398 ACTTGTTTTATCTCCGGGAAGCTCTTAAATACAGATCAAAGTTTACAAGACAACTGTAAG 457
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ACTTGTTTTATCTCCGGGAAGCTCTTGAATACAGATCAAAGTTTACAAGACAACTGTAAG 420
Query 458 TGGATGTCAATGGAATCATGCTTCGACTCTCTTATAGATGTAAAATTGGGCAGTGATCGC 517
|||||||| |||||| ||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 421 TGGATGTCCATGGAAGCATGCTTTGACTCTCTTATAGATGTAAAACCGGGCTGTGATCGT 480
Query 518 GTTGGACCATTAGTACTACTTGGACTTGGGGATGGTTCCCGTCAGT-CTATGAAGCATAA 576
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||
Sbjct 481 GTTGGACCATTAGTACTACTTGGACTTGGGGATGGTTCATGTCAGTCCT-TGAAGCAGAA 539
Query 577 GTTGTCATCTTCTCTGGCTATCCAGGAATATCCACCTGGTGTTATGATTGTGCCGATGCA 636
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 540 GTTGTCATCTTCTCTGTCTATCCAGGAATATCCACCTGGTGTTATGCTTGTGCCAATGCG 599
Query 637 TAGCAAAACATTGAAACCTTTCAGGACAACAAATTTGGTTGTGTTTGCTCCAGAAAATGG 696
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGCAGGACATTGAAACCTTTCAAGACAACAAATTTGGTTGTGTTTGCTCCAGAAAATGG 659
Query 697 TTTGGGGGACCATCAAGGGGCTGATTTTGTAGCTCATGGGGATGCGTTGATAGTGGATCC 756
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCAGGGGATCATCAAGGGACTGATTTTGTAGCTCATGGGGATGCGTTGATAGTGGATCC 719
Query 757 TGGATGTCTC-TCTAAACTCCACGTTGAGCTCAAGAAAATCGTTGATGCTTTACCTAGAA 815
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TGGATGTCTCTTC-AAACTCCACGTTGAGCTCAAGAAAATCGCTGATGCTTTACCTAGAA 778
Query 816 AGCTAATTGTCTTTGTTACACATCACCATCGTGATCACATTGATGGTCTTTCTGCTATAC 875
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 AGCTAATTGTCTTTGTTACACATCACCATCGAGATCACATTGATGGTCTTTCTGCTATAC 838
Query 876 AAGAGAGCAATCCTGATGCTATTCTAGTGGCACATGCTAAAACTAGGCATCGCATTGGTG 935
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||
Sbjct 839 AAGAGAGCAATCCTGATGCTATTTTAGTGGCACATGTTAAAACTAGGCATCACATTGATG 898
Query 936 GTTGGTCTGGTAACTATACCCCAGTTTCTGGAGGAGAAAACATCTATGTCAACGGTCAAA 995
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 899 GTTGGTCTGGTAACTATACCCCAGTTTCTGGAGGAGAAAACATCTATGTCAATGGTCATA 958
Query 996 AACTGACCGTCATTTTTGCTCCGGGACACACAGATGGTCATATGTCACTACTTCATACCT 1055
|| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||
Sbjct 959 AATTGACCGTCATTTTTGCTCCGGGGCACACAGATGGCCATATGGCACTACTTCATATCT 1018
Query 1056 CCACTCAATCTCTGATTGTTGGTGATCATTGTGTTGGTCAAGGAAGTGCTTTCTTGGACA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCACTCAATCTCTGATTGTTGGTGATCATTGTGTTGGTCAAGGAAGTGCTTTCTTGGACA 1078
Query 1116 TCAGGGCAGGTGGTAACATGACAGATTACTTTCAGTCGACATATAAATTCCTGGAGCTTT 1175
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1079 TCAGGGGAGGTGGTAACATGACAGATTACTTTCAATCGACATATAAATTTCTGGAGCTTT 1138
Query 1176 CTCCAAATGTGGTGATTCCCATGCATGGAAGGGTCAATTTGTGGCCGAAACACATGCTTT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTCCAAATGTGGTGATTCCCATGCATGGAAGGGTCAATTTGTGGCCGAAACACATGCTTT 1198
Query 1236 GTGGATATCTCAAAAACCGCAGAAGCAGAGAAAAATCAATCCTAAAGGCCACTGTGGATG 1295
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1199 GTGGATATCTCAAAAACCGCAGAAGCAGAGAAGAATCAATCCTAAAGGCCACTGAGGATG 1258
Query 1296 GAGCTCAGACGTTATATGACATTGTTGCTAAGGTGTACTCAAGTGTGGATCGCAAATTCT 1355
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1259 GAGCTCAGACGTTATATGACATTGTTGCTAACGTGTACTCAAGTGTGGATCGCAGATTCT 1318
Query 1356 GGTGGGCTGCATCATCAAACGTAAGGCTGCATATCGAGAAGCTGGCAGTAGAAAACAAAT 1415
||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1319 GGTGGGCTGCAGCATCAAACGTTAGGCTGCATATCGACAAGCTGGCTGTAGAAAACAAAT 1378
Query 1416 TACCAGAGGGATTCTCAATCC-AAAAGTTCAAAGCAAGTTGCGGATTACGTTTTGCGATA 1474
||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||
Sbjct 1379 TACCAGAGGGATTCTCAATCCGAAAA-TTCAAAGCAAGTTGCGGAATGTGTTTTGCGATA 1437
Query 1475 CGGTGTACAGTGGGTTATATCATTAGCAAGATTCCGTTCAAGATCAATAAGCCAG 1529
||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1438 CGGTGGACAGTGGGTTATATCAGAAGCAAGATTCCGTTCAAGATCAATAAGCCAG 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5