BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25380.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472836 jgi|Araly1|472836|fgenesh2_kg.1__2790__AT1G25380.1 2213 0.0
> Ahg472836 jgi|Araly1|472836|fgenesh2_kg.1__2790__AT1G25380.1
Length=1497
Score = 2213 bits (1198), Expect = 0.0
Identities = 1406/1504 (93%), Gaps = 23/1504 (2%)
Strand=Plus/Plus
Query 43 TTCGACTAGGGACCGCCTAAATCATACGCAAACAAAGTCTCTTCCTTTACCCGTCTACAC 102
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTCGACTTGGGACCGCCTAAATCGTACGC-AACAAAGTCTCTTCCTTTACCCGTCTACAC 59
Query 103 GTTCGAATTTTTT-CTCCGGGTCGGGTCAATGTCAAGAACGACGAGAATTGTATATAATC 161
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 60 GTTCG-ATTTTTTCCTCCGGGTCGGGTCAATGTCAAGAACGACGGGAATTGTATATATTC 118
Query 162 GTCGATTCACGTGGCCG-G-GT-TTATCATTTACTGCTGGATCTCGTTTTCAATTTTGAG 218
||||||| || ||||| | | ||||||| ||||||||||||||||||||||||||||
Sbjct 119 ATCGATTCTCGCGGCCGAGTTTATTATCATCTACTGCTGGATCTCGTTTTCAATTTTGAC 178
Query 219 TCAGATTCCCCCCAATTGAGAGATTCTAGGGTTTTAAGATGATTGAACATGGGAACTCTA 278
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 TCAGATTCCCACCAATTGAGAGATTCTAGGGTTTTAAGATGATTGAACATGGGAACTCAA 238
Query 279 CCTTTGATTACCGGAGTATTAGAGAAGTCGCTGCAAACGCCGGCGCCGGAGCCACCGCAG 338
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 239 CCTTTGATTACCGGAGTATTAGAGAGGTCGCCGCAAACGCCGGTGCCGGAGCCACCGCTG 298
Query 339 GGGCTATCGCGGCGACTTTTGTTTGTCCATTAGATGTGATCAAAACAAGGTTACAGGTTC 398
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGCTATCGCGGCGACTTTCGTTTGTCCATTAGATGTGATCAAAACAAGGTTACAGGTTC 358
Query 399 TTGGTCTCCCTGAAGCTCCAGCCTCTGGTCAAAGAGGTGGTGTAATCATTACAAGTCTGA 458
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 TTGGTCTCCCTGAAACTCCAGCCTCTGGTCAAAGAGGTGGTGTAATCATTACAAGTTTGA 418
Query 459 AGAATATAATTA-AGGAAGAAGGTTATAGGGGAATGTATCGAGGGCTTTCACCAACCATC 517
||||||| | || || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 AGAATAT-AGTACAGAAAGAAGGTTATAGGGGAATGTATCGAGGGCTTTCACCAACTATT 477
Query 518 ATAGCTCTCCTTCCAAATTGGGCTGTCTACTTCTCAGTTTATGGGAAGCTAAAGGATGTG 577
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATAGCTCTCCTCCCTAATTGGGCTGTCTACTTCTCAGTTTATGGGAAGCTAAAGGATGTG 537
Query 578 CTGCAGTCAAGTGATGGCAAGCTTAGTATTGGGTCAAACATGATAGCTGCAGCTGGTGCT 637
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 538 CTGCAGTCAAGTGATGGCAAGCTTAGTATTGGGTCAAACATGGTAGCTGCTGCTGGTGCT 597
Query 638 GGAGCTGCCACATCTATTGCAACTAATCCGCTTTGGGTTGTCAAGACAAGATTAATG--A 695
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 GGAGCTGCTACATCTATTGCAACTAATCCGCTTTGGGTTGTCAAGACAAGATTAATGGTA 657
Query 696 -CGCAAGGAATTAGGCCTGG-TGTGGTACCTTACAAAAGTGTAATGTCTGCATTTAGTAG 753
| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACACAAGGAATTAGACC-GGATGTGGTACCTTACAAAAGTGTAATGTCTGCATTTAGTAG 716
Query 754 GATTTGTCATGAAGAAGGAGTGCGAGGGTTGTACAGTGGCATATTGCCTTCTTTGGCGGG 813
||||||||||||||||||| || ||||| ||||||||||||| || ||||||||||||||
Sbjct 717 GATTTGTCATGAAGAAGGATTGAGAGGGCTGTACAGTGGCATTTTACCTTCTTTGGCGGG 776
Query 814 AGTAAGCCATGTCGCGATCCAGTTTCCAGCTTATGAAAAAATTAAGCAATACATGGCAAA 873
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 777 AGTAAGCCATGTCGCGATCCAGTTTCCAGCTTATGAAAAGATCAAGCAATACATGGCAAA 836
Query 874 GATGGATAATACATCCGTGGAGAATCTGAGTCCTGGGAATGTTGCTATTGCCTCCTCCAT 933
|||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 837 CATGGATAATACATCAGTCGAGAATCTGAGTCCTGGGAATGTTGCTATTGCCTCTTCAAT 896
Query 934 CGCGAAAGTGATCGCCTCTATTTTGACTTACCCACACGAGGTAATTAGGGCGAAGCTTCA 993
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 CGCGAAAGTGATCGCCTCTGTTTTGACTTACCCACACGAGGTAATTAGGGCCAAGCTTCA 956
Query 994 AGAACAAGGGCAGATTAGAAATGCTGAGACTAAGTATTCAGGAGTCATTGATTGCATCAC 1053
|||||||||||| || | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 957 AGAACAAGGGCAAATGAAAAACGCTGAGACTAAGTATTCGGGAGTCATTGATTGCATCAC 1016
Query 1054 AAAGGTGTTCAGAAGCGAAGGGATTCCTGGGTTGTACCGTGGATGTGCCACTAATCTACT 1113
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1017 GAAGGTGTTTAGAAGCGAAGGGATACCTGGGTTGTACCGTGGATGTGCCACTAATCT-CT 1075
Query 1114 -GAGGACAACTCCATCAGCAGTTATTACATTTACAACCTATGAGATGATGCTTAGGTTTT 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 TGAGGACAACTCCATCAGCAGTTATTACATTTACAACCTATGAGATGATGCTTAGATTTT 1135
Query 1173 TCCGACAAGTTGTGCCACCAGAGACTAATAGGTCGGATGATCGCagaagagaagaagaaa 1232
|||||||| || |||||||||||||||||| || || |||| ||| ||||| |||||||
Sbjct 1136 TCCGACAAATTATGCCACCAGAGACTAATAAATCAGAAGATCACAGGAGAGATGAAGAAA 1195
Query 1233 gaaagaatttagttagccgacgaggagaagaagaagataaagaTTTGGGTTTGAGAGAAT 1292
|||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1196 GAAAGAGTTTAGTTAGTCGACGAGGAGAAGAAGAAGAAAAAGATTTGGGTTTGAGAGAAT 1255
Query 1293 CACAAACTCAATCTAATAAGATCAGCACTCCCCATATCCCTCTTGGAAGCAAATAAAACT 1352
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1256 CACAAACTCAATCTAATAAGATCAGCACTCCCCCTATCCCTCTTGGAAGCAAATAAAG-T 1314
Query 1353 TTTTCAGACTCAAGCCATGCTTCATAGGTTTTCtttttttCGATGCCATG--T-T-CCAA 1408
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||
Sbjct 1315 TTTTCAGACTCAAGCCATGCTTCATAGGTTTTCTTTTTTTCAATGCCATGCATGTTCCAG 1374
Query 1409 CTACGTAATTTTTCCCCATGCGGTGATTGAGTTGTAACCTTTTCTCGTGGTTCTAACAAA 1468
|||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1375 TTACGTAATTTTTTCCCTTGCGGTGATCGAGTTGTAACCTTTTCTCGTCGTTCTAACAAA 1434
Query 1469 TGTGTAAACTATCAATAAACTACTTTTT-GGCCCTTTTGATGATCAGTGAGT-ATTTGAA 1526
|||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| |||
Sbjct 1435 TGTGTAAACTATCAATAAACTACTTTTTTGGCCCTTTTGATGATCAGCGAGTCATT-GAA 1493
Query 1527 GATC 1530
||||
Sbjct 1494 GATC 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5