BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25390.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921680 jgi|Araly1|921680|scaffold_102961.1 2874 0.0
> Ahg921680 jgi|Araly1|921680|scaffold_102961.1
Length=1930
Score = 2874 bits (1556), Expect = 0.0
Identities = 1815/1939 (94%), Gaps = 22/1939 (1%)
Strand=Plus/Plus
Query 37 CTTCTAATCAGAATACCTATGGAGACTGTCTCTGTTTTGCTCTTCTTCTTCCTCTTCCTT 96
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CTTCTAATCAGAACACATATGGAGACTGTCTCTGTTTTGCTCTTCTTCTTCCTCTTCCTT 62
Query 97 CTAGCGGCAGAAGCAAGGAGCACCAAGCGGACAGGTTGCAAGGATTTCACCTGCGGAGAA 156
|| | ||||||||| ||||| ||| | |||| ||||||| | |||||||||||||||||
Sbjct 63 CTTGTGGCAGAAGCCAGGAGTACCTACCGGAGAGGTTGCGACTATTTCACCTGCGGAGAA 122
Query 157 CAT-GACTTCAAGTTCCCTTTCTTTAGGACAGAC-ATGCCATCTCGATGCGGTCTTTTCA 214
| ||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||
Sbjct 123 -TTCGACTTCAAGTTCCCTTTCTTTAGCACA-ACTATGCCGTCTCGATGCGGTCTTTTCA 180
Query 215 AGCTGAACTGCAGTGCAAATATTC-CAGAGATACAGCTTGAAAAAGATGGGAAATGGTAT 273
|||||||||||||||||||| || ||||||||||||||| | |||||||| |||||||
Sbjct 181 AGCTGAACTGCAGTGCAAAT-GTCTCAGAGATACAGCTTGTAGAAGATGGGCGATGGTAT 239
Query 274 ACAGTCAAGAGCGTCTCTCAAGCCAACACGATAACCATCATCGACCCGAGGCTTAACCAA 333
| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 240 AAAGTCAAGAGTGTCTCTCAAGCCAACACGATAACAATCACCGACCCGAGGCTTAACCAA 299
Query 334 AGCTTGACAACCGGAGGCTGCAGTGACTTGTCAAGCTTCTCTCTTCCAGATTCTCCATGG 393
||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct 300 AGCTTGACAACCGGAAGCTGCAGTGACTTGTCAAACTTCTCTATTCCAGATTCGCCATGG 359
Query 394 CTCAAATTGAACACGTTGTACAAATGCAACAATAGTAGTAGGAAGAATGGTTTCAGCTAT 453
||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 CTCAACTTGACCACTTTGTACAAATGCAACAACAGTAGTAGGAAGAATGGTTTCAGCTAT 419
Query 454 GCGAATTGCAGAGGAGAAGGAAGCAGCTTGTACTACAATTTGGGAGATGATCATGATGTT 513
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGAATTGCGGAGGAGAAGGAAGCAGCTTGTACTACAATTTGGGAGATGATCATGATGTT 479
Query 514 TCAGGGTGTTCACCTATTAAGACTCCAGAGAGCTGGGTGACTCCAAAAAATGGGAACCTG 573
||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 480 TCAGGGTGTTCACCTATCAAGACTCCAGAGAGCTGGGTGCCTCCAAGAAATGGGAACCAG 539
Query 574 TCTGATGTAAATGCTACCTTCTCTCTTCATATAGAACTGCCTGG-GAACTGCTTTCGCTG 632
|||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 540 TCTGATGTAAATGCTACCTTCTCTCTCCATATAGAACTGCCTGGAGG-CTGCTTTCGCTG 598
Query 633 CCACAATAACGGTGGAGAATGTACAAAGGTTAAAA-ACAA-TTACCGTTGCGTTGGCGCA 690
||||||||||||||||||||||| | | | | ||| |||| || || |||| ||| | |
Sbjct 599 CCACAATAACGGTGGAGAATGTA-AGATGATCAAAGACAAGTT-CCACTGCGATGGAGGA 656
Query 691 AACACAGAACCAAATAA--CTACCATGCGGAGATGAGGCTAGGATTAGGAATAGGAGGAT 748
| || ||||| ||| || ||||||| |||||||||||||||||||| || ||||| |
Sbjct 657 ACCAAAGAAC-AAA-AAGGCTACCATAAGGAGATGAGGCTAGGATTAGCTATCGGAGG-T 713
Query 749 C-TGTCATCTTGATAATCATCTTGGTGGCACTCTTTGCTGTCATCCATAGGAATTACAGA 807
| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 CCTGTCATCTTGATAATCACCTTGGTGGCACTCTTTGCTATCATCCATAGGAATTACAGA 773
Query 808 AGGAAAGATGGTTCAGAGCTCTCCAGAGACAACTCAAAATCTGACGTTGAGTTTAGTCAA 867
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 774 AGGAAAGATGGATCAGAGCTCTCTAGAGACAACTCAAAATCTGACGTTGAGTTTAGTCAT 833
Query 868 GTCTTCTTTAAGATACCAATCTTCTCCTATAAGGAACTTCAAGCAGCAACAGACAACTTT 927
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 GTCTTCTTTAAGATACCAATCTTCTCCTATAAAGAACTTCAAGCAGCAACAGACAACTTT 893
Query 928 AGTAAAGACAGATTACTAGGAGATGGAGGCTTTGGCACTGTGTACTATGGAAAAGTGCGT 987
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 894 AGTAAAGACAGATTACTTGGAGATGGAGGCTTTGGCACTGTGTATTATGGAAAAGTGCGT 953
Query 988 GATGGGCGAGAAGTTGCAGTGAAGCGTCTCTATGAGCACAATTACAGAAGACTTGAGCAA 1047
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GATGGACGAGAAGTTGCAGTGAAGCGTCTCTATGAGCACAATTACAGAAGACTTGAGCAA 1013
Query 1048 TTCATGAACGAGATAGAAATCCTCACACGTCTCCATCACAAGAATCTAGTCTCCCTCTAT 1107
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTTATGAACGAGATAGAAATCCTCACACGTCTCCATCACAAGAATCTAGTCTCCCTCTAC 1073
Query 1108 GGATGCACTTCACGCCGCAGCCGAGAGCTTCTCCTTGTCTATGAGTTTATTCCAAATGGC 1167
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGATGCACTTCACGCCGTAGCCGAGAGCTTCTCCTTGTCTATGAGTTTATTCCAAATGGC 1133
Query 1168 ACAGTTGCAGATCATCTCTATGGCGAAAACACGCCACACCAAGGCTTTTTAACATGGTCA 1227
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1134 ACAGTTGCAGATCATCTCTATGGTGAAAACACGCCACACCAAGGCTATTTAACATGGTCA 1193
Query 1228 ATGCGCCTGAGCATCGCCATAGAAACAGCGAGTGCATTGGCTTACCTTCATGCTTCGGAT 1287
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1194 ATGCGCCTGAACATTGCCATAGAAACAGCGAGTGCATTGGCTTACCTTCACGCTTCGGAT 1253
Query 1288 ATCATACACCGGGATGTCAAGACTACAAACATTCTCCTCGACAGGAATTTCGGAGTAAAA 1347
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1254 ATCATACACCGTGATGTCAAGACTACAAACATTCTCCTCGACGGGAATTTCGGAGTTAAA 1313
Query 1348 GTCGCGGATTTTGGGCTATCCAGGTTGCTCCCGAGTGATGTAACTCATGTTTCAACTGCT 1407
||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1314 GTCGCGGATTTTGGGCTATCCAGGTTGTTACCGAGTGATGTAACACATGTTTCAACTGCT 1373
Query 1408 CCTCAGGGTACTCCGGGATACGTGGATCCAGAATATCATCGCTGCTATCATCTAACAGAT 1467
|||||||||||||||||||| |||||||| || |||||||| || ||||||||||| |||
Sbjct 1374 CCTCAGGGTACTCCGGGATATGTGGATCCTGAGTATCATCGGTGTTATCATCTAACTGAT 1433
Query 1468 AAGAGTGACGTGTATAGCTTTGGGGTGGTGCTTGTCGAGCTGATATCATCGAAGCCTGCT 1527
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1434 AAAAGTGACGTGTATAGCTTTGGAGTGGTGCTTGTCGAGCTGATATCCTCGAAGCCTGCT 1493
Query 1528 GTTGATATAAGTAGATGCAAGAGTGAGATCAATCTATCAAGCTTAGCAATAAACAAGATA 1587
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1494 GTTGATATAAGCAGGTGCAAGAGTGAGATCAATCTATCAAGCTTAGCTATAAACAAGATA 1553
Query 1588 CAAAACCATGCGACCCACGAGCTGATTGATCAGAATCTTGGATATGCAACGAATGAAGGA 1647
|| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1554 CAGAACCACGCGACCCACGAGCTAATTGATCAGAATCTTGGATATGCAACAAATGAAGGA 1613
Query 1648 GTTAGAAAAATGACTACAATGGTGGCAGAGTTGGCTTTTCAGTGCTTGCAGCAAGACAAT 1707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1614 GTTAGAAAAATGACTACAATGGTGGCAGAGTTGGCTTTTCAGTGCTTGCAGCAAGACAGT 1673
Query 1708 ACAATGAGACCCACAATGGAACAAGTTGTGCACGAGCTAAAAGGAATCCAGAATGAGGAG 1767
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1674 ACAATGAGACCCACAATGGAACAAGTTGTGCAAGAGCTAAAAGGAATCCAGAATGAGGAG 1733
Query 1768 CAAAAATGTCCA-ACCTACGA-CTACAGAGAGGAGACAATAATTCCACACCCTTCGCCAC 1825
|||||||||| | ||| |||| | |||||||||||||||||| || |||||||||||||
Sbjct 1734 CAAAAATGTC-ATACCAACGATC-ACAGAGAGGAGACAATAACTCTGCACCCTTCGCCAC 1791
Query 1826 CAGATTGGGGTGAGGCTGCACTATTAAAAAATATGAAATTCCCACGTTCACCAGTCTCTG 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1792 CAGATTGGGGTGAGGCTGCACTATTAAAAAATATGAAATTCCCACGTTCACCAATCTCTG 1851
Query 1886 TGACTGACCAATGGACAAGTAAATCAACCACACCGAATACCAGCGCCTACGAATTCTAGG 1945
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1852 TGACTGACCAATGGACAAGTAAATCAACCACACCGAATACGAGCGCCTACGAATTCTAGG 1911
Query 1946 ATCCACCAGGTATTGGTTT 1964
|||||||||||||||||||
Sbjct 1912 ATCCACCAGGTATTGGTTT 1930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5