BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25400.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921679 jgi|Araly1|921679|scaffold_102960.1 1273 0.0
> Ahg921679 jgi|Araly1|921679|scaffold_102960.1
Length=917
Score = 1273 bits (689), Expect = 0.0
Identities = 841/910 (92%), Gaps = 27/910 (3%)
Strand=Plus/Plus
Query 62 TTTCTGTGATGGAGGTCCCGATTATAAACAGAATAGGCGATTTTGACATGGGGATAAACT 121
||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 13 TTTCTGTCATGGAGGTCCCGATAATAAACAGAATAAGCGATTTTGACGTGGGGATAAACT 72
Query 122 CGATAAACGACCCGTCGTATTTATCTCGAGCTTTGGCAGTCTCCGGTGTCGGAAAGTTAC 181
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 73 CGATAAACGACCCGTCGTATTTATCTCGAGCTTTGGCCGTCTCCGGCGTCGGAAAGTTAC 132
Query 182 ATCAAGCTTATAGTTTTTGGAAATGGGGCGCCTTATTGCTACTTGCATTTTTTGCTTCAT 241
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 133 ATCAAGCTTATAGTTTCTGGAAATGGGGCGCTTTATTGCTACTTGCATTTTTTGCTTCAT 192
Query 242 TTACATCGTTAACTACAAGAATCAAGACTTTAGTCTTTAGATTAAGAAATGTAAACGTGT 301
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 193 TTACATCGTTAACTACAAGAATCAAGGCTTTAGTCTCTAGATTAAGAAATGTAAACGTGT 252
Query 302 CTCTACCTTCCCAAACTCTTTTATGTAATTACGACAGCGACTCCGATTGGTCTTTCT-CG 360
|||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| | ||
Sbjct 253 CTCTACCTTCCCCAACTCTTTTGTGTAATTACGACAGCGATTCCGATTGGTCTTT-TGCG 311
Query 361 TCAGACTCTTCAGACGAAGAGAAAGATGAGGACGATAACAAAGAAGATGACTCGGTCAAT 420
||||||||||||||| | ||||||| |||||| ||||||||||||| |||||||||
Sbjct 312 TCAGACTCTTCAGAC-----G-AAGATGATGACGATGACAAAGAAGATGAATCGGTCAAT 365
Query 421 GGCGATTCACGCGTTCAAAGATTTGGTTATTACCATGATGATGATGATAAGGGTATTAGT 480
|| |||| ||||||| |||||||| |||||| |||||||||||||||||||| ||| | |
Sbjct 366 GGAGATTTACGCGTTAAAAGATTTAGTTATTTCCATGATGATGATGATAAGGCTATAAAT 425
Query 481 GGAAGTGTCCCCTGGTTGCGGCGGTGCAGTGGTAGCTTCGGAGATTTGTTAGATTTAGGC 540
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 426 GGAAATGTCCCCTGGTTGCGGCGGTGCAGTGGTAGCTTCGGAGACTTGTTAGATTTAGGC 485
Query 541 TCAAGCGGAGTCGTGAAGCTTTGGGACAATCTTGATTTCAACGGAGAAGGAAGTC-C-G- 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 486 TCGAGCGGAGTCGTGAAGCTTTGGGACAATCTTGATTTCAACGGAGAAGGAAGTCACCGT 545
Query 598 --G----TGGCTTCTTTTTTCAGCAAATGCGGCTCATACTCGTTATTGTCATCGGCGGTT 651
| ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 546 AAGGCGGTGGCTTCTTTTTTGAGCAAATGCGGCTCTTACTCGTTGTTGTCGTCGGCGGTT 605
Query 652 TTATTAGCGGCGGAGAAGAAAGGATCCGACGGCTTGGAAGTGAGTGCGTGGGATGCACGC 711
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 TTATTAGCGGCGGAGAAGAAAGGATCCGACGGCCTGGAAGTGAGTGCGTGGGATGCACGC 665
Query 712 GTTGGTTTTGGGGTGCCCGCGTTGCTCGCGGAATGGAAGCAGCCGGGAAGGTTACTCGGG 771
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 666 GCCGGTTTTGGGGTCCCCGCGTTGCTCGCGGAATGGAAGCAGCCGGGGCGGTTACTTGGG 725
Query 772 AAGATCATTAGGGTTGACGTAGGTGACGTGGACAAGATCTACGTCGGTGATGACGTCGAA 831
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 726 AAGATCATTAGGGTTGACGTTGGTGACGTGGACAAGATCTACGTCGGTGATGACGTCGGA 785
Query 832 GGAGAGATTACTGTGGGAGACATGAGGATGGTTAACGGTGCGTTGACGGAACTGACGGAA 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 786 GGAGAGATTACTGTGGGAGACATGAGGATGGTTAACGGTGCGTTGACGGAACTGACTGAA 845
Query 892 TCAGAGGTTGAGAGGA-TGGTGAGAAGACGC--A-G---ACGCCGTCATTGA-G-GCTGA 942
|||||||||||| ||| |||||||||||||| | | ||||||||||||| | |||||
Sbjct 846 TCAGAGGTTGAG-GGAATGGTGAGAAGACGCCGACGCCGACGCCGTCATTGATGAGCTGA 904
Query 943 CGGTGCCGTT 952
|||| |||||
Sbjct 905 CGGTTCCGTT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5