BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25420.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921678 jgi|Araly1|921678|scaffold_102959.1 1677 0.0
> Ahg921678 jgi|Araly1|921678|scaffold_102959.1
Length=1016
Score = 1677 bits (908), Expect = 0.0
Identities = 982/1018 (96%), Gaps = 4/1018 (0%)
Strand=Plus/Plus
Query 60 TTGATT-CCTCTGCTTCCGGTTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 118
|||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGATTCCCTCTAC-TCCGATTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 59
Query 119 TTTGGCGCCAAATGCAAGACAAGCTTGAACTTGGCGATAGCTCGAATGAAATTGCTGCAA 178
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 60 TTTGGCGCCAAATGCAAGACAAGCTTGAATTTGGCGATTGCTCGAATGAAATTGCTGCAA 119
Query 179 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCACTTCTTGCAAGCT 238
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCAGTTCTTGCAAGCC 179
Query 239 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 239
Query 299 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTATACTTGCTCGTGTTCCAATTCTT 358
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTGTACTTGCTCGTGTTCCAATTCTC 299
Query 359 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 359
Query 419 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATAAAGAATCTGTTTGGTACAAAA 478
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 360 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATTAAGAATCTCTTTGGTACAAAA 419
Query 479 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCGGATTCTGGTGTCAATCGT 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCCGATTCTGGTGTCAATCGT 479
Query 539 ACTATCATTGAGAAGCTTTCTCCTACCAGTCCATCTGGAGCGGCAAGGCTCAAGATGTTA 598
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 480 ACTATCATTGAAAAGCTTTCTCCTACCAGTCCATCGGGAGAGGCAAGGCTCAAGATGTTA 539
Query 599 AAGGAAATTGCGCAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCAGAGTTC 658
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 AAGGAAATTGCGAAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCTGAGTTC 599
Query 659 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 659
Query 719 TCTGAATCTCGACCGTCCCAACAAGGCTACGGTCAGTCTTCGGTTTCTAGGGAAGTTGAA 778
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||
Sbjct 660 TCTGAATCTCGACCGTCCCAGCAAGGCTACAGTCAGTCTTCGGTTTCTAGGGAGGCTGAA 719
Query 779 AGTCTGCCTGCAGAGGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 838
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTCTGCCTGCAGATGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 779
Query 839 AAAAGCATGCCATCATCTAAGCTGACTTCAGCCTT-TCAAGCTCCTCCTGATACTAGACG 897
|||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 780 AAAAACATGCCATCATCTAAACTGACTTCAGC-TTCTCAAGCTCCTCCTGATACTAGACG 838
Query 898 GAATCAGACTGATGTAATGGAGATAGCTCGAGCTGCCCTAGCTAGCGCTGATCGTGCAAC 957
| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 839 GGATCAGACTGATGTAATGGAGAGAGCTCGAGCTGCTCTAGCTAGCGCTGATCGTGCAAC 898
Query 958 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTACTACACCCAC 1017
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTCCTACACCCAC 958
Query 1018 AGTAGCAGCAGAAGGGAAGCCCTTAAACTTAATGTAGTTGCCACGTCGTCATTTGTGA 1075
||||||||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct 959 AGTAGCAGCCGAAGGGAAGTCCTTAAACTTAACGTAGTGGCCACGTCATCATTTGTGA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5