BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G25422.1

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921676 jgi|Araly1|921676|scaffold_102957.1                        540    8e-153


> Ahg921676 jgi|Araly1|921676|scaffold_102957.1
Length=375

 Score =  540 bits (292),  Expect = 8e-153
 Identities = 349/375 (93%), Gaps = 9/375 (2%)
 Strand=Plus/Plus

Query  215  ATACATACATTGATCACATCCATgaagaaggagaggaagagacaagta-c--a-g-g-ag  268
            ||| |||||||||||| ||  ||||||||||||||||||||||||||| |  | | | ||
Sbjct  1    ATAAATACATTGATCATATATATGAAGAAGGAGAGGAAGAGACAAGTACCGGAGGAGAAG  60

Query  269  gagga-g-ga-ggagaaggaggtggaggTTGTTGTGGTGGATGCGTTGACAGCAGCAGCA  325
            ||||| | || ||||| |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct  61   GAGGAGGAGAGGGAGATGGAGGTGGAGGTGGTTGTGGTGGATGCATTGGCTGCAGCAGCA  120

Query  326  ACGGTGGCTGCGGCTGCGGCGATGGAGGAGGAGGAGCAATTGTGGGGGATGAGGCTTAAG  385
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  121  ACGGTGGCTGCGGCTGCGGCGGTGGAGGAGGAGGAGGAATTGTGGGGGATGAGGCTTAAG  180

Query  386  GCGGGAGATGGTGTGGTCGACGAGCTGATGACGTGGAACACCGTTTGGTTGCCTTCATGT  445
            |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  181  GCGGGAGATGATGTGGTCGACGAGCTGATGACGTGGAGCACGGTTTGGTTGCCTTCATGT  240

Query  446  TGGGACGTGGAGTTCGTTGAGAAAAACTATGGAGTTTTGTATAATGATGTTGTGTGGGAC  505
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  241  TGGGACGTGGAGTTCGTTGAGAAAAACTATGGAGTTCTGTATAATGATGTTGTGTGGGAC  300

Query  506  GATGATCTTTGGAATTTGAACACTTCCACTCAGGATAACATAAGACAAAACTGAAGTTGG  565
            ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  301  GATGATCTTTGGAATTTGAACACTTCCCCTCAGGATAACATAAGACAAAGCTGAAGTTGG  360

Query  566  GGAGATTTTTAACGT  580
            |||||||||||||||
Sbjct  361  GGAGATTTTTAACGT  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38732883672


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5