BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25425.1
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313386 jgi|Araly1|313386|fgenesh1_pm.C_scaffold_1002166 457 5e-128
> Ahg313386 jgi|Araly1|313386|fgenesh1_pm.C_scaffold_1002166
Length=288
Score = 457 bits (247), Expect = 5e-128
Identities = 277/291 (95%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 133 ATGGGTTGTCGAGATATTCTGTTGACTTTCTCCGTCGCTCTCTTACTCATCTCTCTCTTC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTCGAGATATTCTGTTGACTTTCTCCGTCGCTCTCTTACTCATCTCTCTCTTC 60
Query 193 CAGATCTGGCTTTTCCGGGAAGGACGACAAGTTCCGGAACTATCGGACGACCAACTAGGA 252
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAGATCTGGCTTTTTCGGGAAGGACGACAGGTTCCGGAACTATCGGACGACCAACTAGGA 120
Query 253 AAAGACAGAAATACCCTCATGACCTCCAAGAACAAGAACAAGAACGAGGATGTTCAACGG 312
|||||| | ||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 121 AAAGACGGTAATACCCTCATGACCTCCAAGAACAAGAAG--GA-CGAAGATGTTCAACGA 177
Query 313 CTCTTCCAAAGGTATTTCAAGGGAAGATCTTTTGGTTTAAACAACACCAACTCTCGCTTT 372
||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 178 CTCTTCCAAAGGTATTTCAAGGGAAGATCGTTTGGTTTGAACAACACCAACCCTCGCTTT 237
Query 373 GAAGATTCCAATAGAAGGATCCCTAGTTCCCCGGATCGCCTTCATAACTAG 423
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 GAAGATTCCAATAGAAGGATCCCTAGTTCCCCGGATCGCCTTCACAACTAG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23140610619
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5