BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25440.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472829 jgi|Araly1|472829|fgenesh2_kg.1__2783__AT1G25440.1 2303 0.0
> Ahg472829 jgi|Araly1|472829|fgenesh2_kg.1__2783__AT1G25440.1
Length=1578
Score = 2303 bits (1247), Expect = 0.0
Identities = 1487/1598 (93%), Gaps = 35/1598 (2%)
Strand=Plus/Plus
Query 64 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATAATTGAGATTGATCTCAAAA 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 6 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATTATTGAGATTGATCTCAAAA 65
Query 124 CCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTGTGTAGACTTTGTATACAATGATGA 183
|||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||
Sbjct 66 TCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTTTTTAGAGTTTGTATACAAAGATGA 125
Query 184 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTGAAGA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 126 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTCAAGA 185
Query 244 GACGTGCACGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAGTCTTGCGACAGTT 303
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 186 GACGTGCGCGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAATCTTGTGACAGTT 245
Query 304 TGGTCCATTCAGCAAACCCTCTTGCTCGCCGCCACGAGAGAGTCCGTTTGAAGACGGCTA 363
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 246 TGGTCCACTCAGCGAACCCTCTTGCTCGCCGGCACGAGAGAGTCCGTTTGAAGACGGCCA 305
Query 364 GCCCGGCGGTCGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGTCGCCA 423
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 306 GCCCGGCGGTGGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGCCGCCA 365
Query 424 CGTGGCATCACGGGTTTACTCGTAAAGCTCGAACGCCACGTGGCTCTGGTAAGAAAAACA 483
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 366 CGTGGCATCACGGGTTCACTCGTAAAGCTCGGACGCCACGTGGCTCTGGTAAGAAGAACA 425
Query 484 ATTCGTCGATATTTCATGACTTGGTTCCTGATATTAGTATTGAGGATCAGACAGACAACT 543
|||||||||| |||||||||||||| || || |||||| ||||||||||||| |||| ||
Sbjct 426 ATTCGTCGATTTTTCATGACTTGGTGCCGGAGATTAGTGTTGAGGATCAGACTGACAGCT 485
Query 544 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGATCCGTTGGTGTCTGAGC 603
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 486 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGACCCGCTGGTGGCTGAGC 545
Query 604 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCTATGATCAGAAGTGGTTTGA 663
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 546 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCGATGATGAGAAGTGGTATGA 605
Query 664 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGATTTTTCCCGACCGACA 723
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 606 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGTTTTTTCCCAACCGACA 665
Query 724 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACACGG 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 666 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACTCTG 725
Query 784 AGTCGTATGCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCAAAATCGAAAAAG 843
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGTCCTATCCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCAAAATCGAAAAAG 785
Query 844 ATGAGATTGAAGAAGAAGTAGAAGAGATAAAAGCCATGAGCATGGATATATTTGATGATG 903
| ||||||||||||||||||||||| | ||||||||||| |||||| ||||| |||||||
Sbjct 786 ACGAGATTGAAGAAGAAGTAGAAGAAAGAAAAGCCATGAACATGGAAATATTCGATGATG 845
Query 904 ATCGAAAAGACGTGGATGGAACAGTACCGTTTGAGCTAAGCTTTGATTACGAGTCGTCAC 963
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 846 ATCGAAAAGACGGGGATGGGACAGTACCGTTTGAGCTAAACTTTGATTACGAGTCGTCAC 905
Query 964 ACAAGACGTCCGAAGAAGAGGTAATGAAGAACGTTGAAAGTAGTGGTGAATGTGTTGTTA 1023
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 906 ACAAGACATCCGAAGAAGAGGTAATGAAGAATGTTGAAAGTAGTGGTGAATGTGTTGTTA 965
Query 1024 AGGTGAAAGAGGAAGAACATAAGAATGTTCTGATGCTAAGATTAAACTATGACTCGGTGA 1083
|||| |||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |
Sbjct 966 AGGTAAAAGAGGAAGAACAGAAGAATGTTCTGTTGCTGAGATTAAACTACGACTCGGTTA 1025
Query 1084 TATCCACTTGGGGAGGTCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAACGAGACA 1143
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1026 TATCCACTTGGGGCGGCCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAGCGAGACA 1085
Query 1144 TGGACATCAGCGGTTGGCCAGCCTTTTCCATGGTGGAGAATGGAGGAGAAAGTACTCATC 1203
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 1086 TGGACATCAGCGGTTGGCCAGCCGTTTCCATGGGGGAGAATGGAGGAGAAAATACTCATA 1145
Query 1204 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGGTTTGGAGATGGAGGTAGAGAAG 1263
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1146 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGATTTGGAGATGGAGGTAGAGAAG 1205
Query 1264 CTAGAGTTTCGAGATACAGAGAGAAGAGGAGGACAAGGTTGTTTTCTAAGAAGATACGGT 1323
|| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 1206 CTCGGGTTTCGAGATACAGAGAGAAGAGAAGGACGAGGTTGTTTTCTAAGAAGATAAGGT 1265
Query 1324 ACGAGGTACGTAAATTGAATGCAGAGAAAAGACCACGAATGAAAGGAAGATTCGTGAAGA 1383
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1266 ACGAGGTACGTAAACTGAATGCGGAGAAAAGACCACGAATGAAAGGAAGATTCGTTAAGA 1325
Query 1384 GAGCCTCGCTCGCTGCT---G---CTGC---TTCACCATTAGGTGTTAATTACTGAATAG 1434
||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 1326 GAGCCTCGCTCGCTGCTTCCGGTGCTGCAAATTCACCATTAGGTGTTAATTACTGAATAG 1385
Query 1435 TTAATATCTATTCATGTTATATCTCACTTTACAAATTTCGGTGAATCTTTTTT-CTTCTG 1493
| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 1386 TGAATATCTATTCATGTTATATCTCACTTTACAAATTTTGGTGAA-CTTTTTTTCTTCTG 1444
Query 1494 AAACAACAGAAGTTATTTTGGCACTTAATTGTGCTTTGAGGACTTGTATGTACATAGAAG 1553
||||||||||||||||||||||||||||||||| | | | ||| |||||| |
Sbjct 1445 AAACAACAGAAGTTATTTTGGCACTTAATTGTG-T---A----T-GTA----CATAGATG 1491
Query 1554 TAACCAATAATAATGTGACTTTTACTTGTATTGATAGCACTGATGTATATATCTGGTAAT 1613
||||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 1492 TAACCAATAAT---GTGACTTTT-CTTGTATTGATAGTACTGATGTATATATTTGGTAAT 1547
Query 1614 AAGAATGTGCAAACTGCAAAGGCATTTTGATTGTTAAA 1651
||||||||||||| | | ||||||||||||||||
Sbjct 1548 AAGAATGTGCAAA--G----G-CATTTTGATTGTTAAA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5