BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25450.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472828 jgi|Araly1|472828|fgenesh2_kg.1__2782__AT1G25450.1 2540 0.0
Ahg926134 jgi|Araly1|926134|scaffold_201695.1 1179 0.0
> Ahg472828 jgi|Araly1|472828|fgenesh2_kg.1__2782__AT1G25450.1
Length=1705
Score = 2540 bits (1375), Expect = 0.0
Identities = 1516/1585 (96%), Gaps = 5/1585 (0%)
Strand=Plus/Plus
Query 13 CTCCCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTCTTCC-TCCA 71
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 CTCTCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTC-TCCATCCA 59
Query 72 CACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 119
Query 132 GCTTAAATATGTTAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTCTTCTTTT 191
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 120 GCTTAAATATGTGAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTGTCCTTCT 179
Query 192 GATTCCAGTCATAGCAACCGTCGCCATCGAGCTTCTCCGAATGGGTCCGGAAGAGATTCT 251
||||||||||||||| ||| ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 180 GATTCCAGTCATAGCGACCATCGTCATTGAGCTTCTCCGAATGGGTCCCGAAGAGATTCT 239
Query 252 CAGTGTCTTGAACTCACTCCACTTCGAGCTTCTTCATATCCTTTGTTCCTCTTTCCTTAT 311
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CAGTGTCTTGAACTCACTCCACTTCGAGCTCCTTCATATCCTTTGTTCCTCTTTCCTTAT 299
Query 312 TATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGTACCGTCTACCTTGTGGACTA 371
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 300 CATTTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGCACCGTCTACCTTGTAGACTA 359
Query 372 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCGTTCATGGAACACTC 431
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCCTTCATGGAACACTC 419
Query 432 TCGTCTCATCCTCAAAGACAATCCCAAGAGTGTCGAATTCCAAATGAGAATCCTCGAGCG 491
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TCGTCTCATCCTCAAAGACAATCCCAAGAGCGTCGAATTCCAAATGAGAATCCTCGAGCG 479
Query 492 ATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 551
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCTGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 539
Query 552 AACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACCGCCATGGAAGATCT 611
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACAGCCATGGAAGATCT 599
Query 612 CTTCAAGAATACAGGTCTTAAACCTAAAGACATCGACATCCTCATTGTTAATTGCTCTCT 671
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTTCAAGAATACAGGTCTTAAACCTAAAGACATTGACATCCTCATTGTTAATTGCTCTCT 659
Query 672 GTTCTCACCAACGCCGTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 731
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTTTCACCAACGCCTTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 719
Query 732 CATCAAAAGCTATAACCTTTCCGGGATGGGATGCAGCGCTAGTCTTATCTCAGTTGATGT 791
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct 720 CATCAAAAGTTATAACCTTTCTGGGATGGGATGTAGCGCCAGTCTTATCTCCGTCGATGT 779
Query 792 AGCACGTGATTTGTTACAAGTCCATCCTAACTCCAACGCAATCATAATTAGCACTGAGAT 851
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 AGTACGTGACTTGTTACAAGTCCATCCTAACTCCAACGCAGTCATAATTAGCACTGAGAT 839
Query 852 CATTACTCCTAATTACTATAAGGGTAATGAGAGAGCCATGTTGCTCCCAAACTGCCTCTT 911
||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 840 CATTACTCCTAATTACTATAAAGGTATTGAGAGAGCCATGTTGCTCCCAAACTGTCTCTT 899
Query 912 CCGTATGGGAGGCGCCGCCATTCTCCTCTCTAACCGCAGATCCGACAGGTGGCGAGCTAA 971
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 CCGCATGGGAGGCGCCGCCATTCTCCTCTCGAACCGCAGATCCGACAGGTGGCGAGCTAA 959
Query 972 GTACAAGTTATGCCACCTTGTTAGGACCCATCGCGGTGCGGATGACAAATCCTACAACTG 1031
||||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 960 GTACAAGCTATGCCACCTTGTTAGGACCCACCGCGGTGCGGATGACAAGTCTTACAACTG 1019
Query 1032 TGTTATGGAACAGGAAGACAAAAATGGTAACGTGGGAATCAACTTGTCTAAAGATCTCAT 1091
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1020 TGTTATGGAGCAGGAAGACAAAAACGGTAATGTGGGGATCAACTTGTCTAAAGATCTCAT 1079
Query 1092 GACCATTGCCGGAGAAGCCTTGAAAG-CTAATATCACTACCATAGGTCCTTTGGTCCTTC 1150
|||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct 1080 GACCATCGCCGGAGAAGCATTG-AAGTCTAACATCACTACCATAGGTCCTTTGGTTCTTC 1138
Query 1151 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1198
Query 1211 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1258
Query 1271 GAGGAAGAGCGGTGATTGATGAGCTGCAAAAGAATCTACAGCTGTCGGGAGAACACGTGG 1330
||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 1259 GAGGAAGGGCGGTGATTGACGAGCTGCAAAAGAATTTGCAGCTGTCGGGAGAACACGTGG 1318
Query 1331 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACATCGTCGTCATCATTATGGTATG 1390
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1319 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACCTCGTCGTCATCATTGTGGTATG 1378
Query 1391 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAACGATAGGGTTTGGCAGATCG 1450
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAGTGATAGGGTTTGGCAGATCG 1438
Query 1451 CTTTCGGAAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1510
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CGTTCGGGAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1498
Query 1511 CACCAACGGATGGAGCGTGGTCGGATTGTATCGAACGATACCCTGTCTTTATCCCTGAAG 1570
|||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1499 CACCAACGGATGGAGCATGGTCGGATTGTATCCAACGATATCCTGTCTTTATCCCTGAAG 1558
Query 1571 TTGTTAAACTATGAAAATA-Ctttt 1594
|||| |||||||||||||| |||||
Sbjct 1559 TTGTCAAACTATGAAAATAACTTTT 1583
> Ahg926134 jgi|Araly1|926134|scaffold_201695.1
Length=1797
Score = 1179 bits (638), Expect = 0.0
Identities = 1208/1484 (81%), Gaps = 36/1484 (2%)
Strand=Plus/Plus
Query 115 TTCTCGAGCTCCGTGAAGCTTAAATATGTTAAACTCGGTTACCAATACCTT-ATCAA-CA 172
||||| ||||| |||||||| || || || ||||| ||||||||||| || | || |
Sbjct 93 TTCTCTAGCTCGGTGAAGCTCAAGTACGTGAAACTTGGTTACCAATA-TTTGGTTAATC- 150
Query 173 ACTTCCTT-ACTCTTCTTTTGATTCCAG-TCATAGCAACCGTCGCCATCGAGCTTCTCCG 230
| || ||| | | ||||||||| ||| | |||| || | ||||||| | |||||||| ||
Sbjct 151 A-TTTCTTGAGTTTTCTTTTGA-TCCCGATCATGGCTATCGTCGCCGTTGAGCTTCTTCG 208
Query 231 AATGGGTCC-GGAAGAGATTCTCAGTGTCTT-GAACTCACTCCACTTCGAGCTTCTTCAT 288
|||||||| || |||||| || | ||| || ||||||||| || || || || ||||
Sbjct 209 GATGGGTCCTGG-AGAGATCCTTAATGT-TTGGAACTCACTTCAGTTTGACCTAGTTCAG 266
Query 289 ATCCTTTGTTCCTCTTTCCTTATTATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCA 348
| || ||||| || ||| || | ||||| | || ||||||||||||||||||||||||
Sbjct 267 GTTCTATGTTCTTCCTTCTTTGTCATCTTCATCTCCACCGTTTACTTCATGTCCAAGCCA 326
Query 349 CGTACCGTCTACCTTGTGGACTACTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCG 408
|||||| ||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 327 CGTACCATCTACCTCGTTGACTATTCTTGTTACAAGCCACCTGTCACGTGTCGTGTCCCC 386
Query 409 TTCTCTTCGTTCATGGAACACTCTCGTCTCATCCTCAAAGACAATCCC-AAGAGTGTCGA 467
||| | | |||||||||||||||||| | | |||||| ||||| ||| ||||| || ||
Sbjct 387 TTCGCAACTTTCATGGAACACTCTCGTTTGAACCTCAAGGACAA-CCCTAAGAGCGTTGA 445
Query 468 ATTCCAAATGAGAATCCTCGAGCGATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGC 527
||||||||||||||||| || || || || || || |||||||||||||||||||| ||
Sbjct 446 GTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCGGTGAAGAGACTTGTCTCCCTCCGGC 505
Query 528 TATTCATTACATCCCTCCAACTCCAACCATGGAATCCGCAAGAAACGAGGCCCAAATGGT 587
||||||||| || ||||| || ||||||||||| | || |||| ||||| || |||||
Sbjct 506 TATTCATTATATTCCTCCGACACCAACCATGGACGCGGCTAGAAGTGAGGCTCAGATGGT 565
Query 588 TATCTTCACCGCCATGGAAGATCTCTTCAAGAATACAGGTCTTAAACCTAAAGACATCGA 647
||||||||| |||||||| ||||| |||||||| || |||||||||||||||||| ||||
Sbjct 566 TATCTTCACGGCCATGGACGATCTATTCAAGAAAACCGGTCTTAAACCTAAAGACGTCGA 625
Query 648 CATCCTCATTGTTAATTGCTCTCTGTTCTCACCAACGCCGTCTCTCTCCGCTATGATTAT 707
|||||| || || ||||||||||| ||||| || || || || ||||| |||||| | ||
Sbjct 626 CATCCTTATCGTCAATTGCTCTCTTTTCTCTCCCACACCATCACTCTCAGCTATGGTCAT 685
Query 708 CAACAAGTACAAGCTTAGGAGTAACATCAAAAGCTAT-AACCTTTCCGGGATGGGATGCA 766
|||||| || |||||||||||||| |||||||||| | || || || |||||||| ||||
Sbjct 686 CAACAAATATAAGCTTAGGAGTAATATCAAAAGCT-TCAATCTCTCGGGGATGGGCTGCA 744
Query 767 GCGCTAGTCTTATCTCAGTTGATGTAGCACGTGATTTGTTACAAGTCCATCCTAACTCCA 826
|||| | || |||||||||||| |||| || || ||| | ||||| ||||| || || |
Sbjct 745 GCGCGGGCCTCATCTCAGTTGATCTAGCCCGCGACTTGCTCCAAGTTCATCCCAATTCAA 804
Query 827 ACGCAATCATAATTAGCACTGAGATCATTACTCCTAATTACTAT-AAGGGTAATGAGAGA 885
| |||||||| | ||||| |||||||| || |||||||||||| |||| || ||||||
Sbjct 805 ATGCAATCATCGTCAGCACGGAGATCATAACGCCTAATTACTATCAAGGA-AACGAGAGA 863
Query 886 GCCATGTTGCT-CCCAAACTGCCTCTTCCGTATGGGAGGCGCC-GCCATTCTCCTCTCTA 943
||||||||| | ||||| ||||||||||| ||||| | || | ||||| | | | || |
Sbjct 864 GCCATGTTGTTACCCAAT-TGCCTCTTCCGCATGGGCG-CGGCAGCCATACACATGTCAA 921
Query 944 ACCGCAGATCCGACAGGTGGCGAGCTAAGTACAAG-TTATGCCACCTTGTTAGGACCCAT 1002
||||| | || ||| |||||||||| || |||||| || | ||| || || |||||||
Sbjct 922 ACCGCCGCTCTGACCGGTGGCGAGCCAAATACAAGCTT-TCCCATCTGGTCCGGACCCAC 980
Query 1003 CGCGGTGCGGATGACAAATCCTACAACTGTGT-TATGGAACAGGAAGACAAA-AATGGTA 1060
|||||||| || ||||| || | | ||||||| || | |||||||||||||| || || |
Sbjct 981 CGCGGTGCTGACGACAAGTCTTTCTACTGTGTCTACG-AACAGGAAGACAAAGAA-GG-A 1037
Query 1061 -ACGTGGGAATCAACTTGTCTAAAGATCTCATGACCATTGCCGGAGAAGCCTTGAAAGCT 1119
|||| || ||||||||||| |||||||||||| | || ||||| |||||| | || ||
Sbjct 1038 CACGTTGGCATCAACTTGTCCAAAGATCTCATGGCTATCGCCGGTGAAGCCCTCAAGGCA 1097
Query 1120 AATATCACTACCATAGGTCCTTTGGTCCTTCCGGCATCGGAGCAGCTTCTCTTCCTCTCA 1179
|| ||||| || |||||||||||||| || ||||| || || || |||||||||||| |
Sbjct 1098 AACATCACCACAATAGGTCCTTTGGTACTACCGGCGTCAGAACAACTTCTCTTCCTCACG 1157
Query 1180 TCCCTTATCGGACGTAAAATCTTCAATCCAAAGTGGAAGCCGTACATACCAGATTTCAAG 1239
||||| ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 1158 TCCCTAATCGGGCGTAAAATCTTCAACCCAAAATGGAAACCATACATACCGGATTTCAAA 1217
Query 1240 CAGGCCTTCGAGCATTTCTGCATCCACGCAGGAGGAAGAGCGGTGATTGATGAGCTGCAA 1299
| ||||||||| || |||||||| ||||||||||| |||||||| || || ||||| ||
Sbjct 1218 CTGGCCTTCGAACACTTCTGCATTCACGCAGGAGGCAGAGCGGTTATCGACGAGCTCCAG 1277
Query 1300 AAGAATCTACAGCTGTCGGGAGAACACGTGGAAGCTTCAAGAATGACACTACATAGGTTT 1359
||||| |||||||| || ||||||||||| || || || ||||||||||||||| | |||
Sbjct 1278 AAGAACCTACAGCTATCAGGAGAACACGTTGAGGCCTCGAGAATGACACTACATCGTTTT 1337
Query 1360 GGTAATACATCGTCGTCATCATTATGGTATGAGCTTAGCTACATAGAGGCTCAAGGGAGA 1419
||||| || || |||||||| || ||||| |||||||||||||| ||| || |||||| |
Sbjct 1338 GGTAACACGTCATCGTCATCGTTGTGGTACGAGCTTAGCTACATCGAGTCTAAAGGGAAA 1397
Query 1420 ATGAAGAGAAACGATAGGGTTTGGCAGATCGC-TTTCGGAAGTGGATTCAAGTGTAACTC 1478
|||| |||| |||| | ||||||||||| || ||| ||||| || || |||||||||||
Sbjct 1398 ATGAGGAGAGGCGATCGTGTTTGGCAGATTGCGTTT-GGAAGCGGTTTTAAGTGTAACTC 1456
Query 1479 CGCCGTTTGGAAATGTAACCGTACGATCAAGACACC-AACGGATGGAGCGTGGTCGGATT 1537
||||| |||| |||||||||||||| |||||||| || ||| ||| | ||||| ||||
Sbjct 1457 AGCCGTGTGGATGTGTAACCGTACGATTAAGACACCTAA-GGACGGACCATGGTCCGATT 1515
Query 1538 GTATCGAACGATACCCTGTCTTTAT-CCCTGAAGTTGTTAAACT 1580
||||||| || |||||||||||||| ||| |||||||| |||||
Sbjct 1516 GTATCGACCGTTACCCTGTCTTTATTCCC-GAAGTTGTCAAACT 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5