BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25460.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472827 jgi|Araly1|472827|fgenesh2_kg.1__2781__AT1G25460.1 1146 0.0
> Ahg472827 jgi|Araly1|472827|fgenesh2_kg.1__2781__AT1G25460.1
Length=909
Score = 1146 bits (620), Expect = 0.0
Identities = 723/772 (94%), Gaps = 9/772 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAGTACTTGGTTACCGGAGGAACCAGCTTTATAGCCTCTCATGTTATCAAGTCA 60
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||
Sbjct 1 ATGGCAGAGTACTTGGTTACTGGAGGAACCAGCTTTATAGCCTCTCACGTCATCAAGACA 60
Query 61 CTTCTAGAATTTGGTCATTACGTAAGAACAACTGTTAGAGACTCAGAAGATGAAGAAAA- 119
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTCGAATTTGGTCATTACGTAAGAACAACTGTTAGAGACTCAGGAGATGAAGAAAAG 120
Query 120 G--G-TGGGTTTCTTGTGGGACTTAAAAGGAGCAAAAGAAAGGTTGAAGATCTTCGAAGC 176
| | ||| |||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 121 GACGTTGGTTTTC-TATGGGAGTTAAAAGGAGCAAAAGAAAGGTTGAAGATCTTTGAAGC 179
Query 177 TGATCTAACGATAGAGGGAAGCTTTGACGAAGCAGTCAACGGTGTTGATGGAGTCTTCCA 236
|||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 180 TGATCTAACGGTAGAAGGAAGCTTTGATGATGCAGTCAACGGTGTTGATGGAGTCTTCCA 239
Query 237 CATCGCATCTCGAGTTTCTGTTCGTCTG-GACAACAACAATCTGGATAAATTTGATCCTA 295
||||||||| |||||||||||| ||| | || |||||||||||||| ||||||||||| |
Sbjct 240 CATCGCATCCCGAGTTTCTGTTGGTC-GAGATAACAACAATCTGGAGAAATTTGATCCGA 298
Query 296 ATATAAGTGGAACAATGAATGTGATGAACTCTTGTGCAAAGTCAAGAAACACTGTGAAAA 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 ATATAAGTGGAACAATGAATGTGATGAACTCTTGTGCAAAGTCAAGAAACACTGTGAAGA 358
Query 356 GGATTGTTCTCACATCTTCTTCAACCGCGATACGGTACCGTTTTGATGCTACACAAGTCT 415
||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||
Sbjct 359 GGATTGTTCTCACATCTTCTTCAACTACAATACGTTACCGTTTTGACGCTACACAAGTCT 418
Query 416 CTCCACTTAATGAATCGCATTGGACCGATCTTGAATACTGCAAACACTTCAAAATTTGGT 475
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 419 CTCCACTTAACGAATCGCATTGGACTGATCTTGAATACTGCAAACGCTTCAAAATTTGGT 478
Query 476 AT-GCTTATAAAAAGACTTTAGGGGAGAAAGAAGCTTGGAGGATCGCAGCTGATAAGAAG 534
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 ATGGC-TATAAAAAGACTTTAGGGGAGAAAGAAGCGTGGAGGATCGCAGCTGATAAGAAG 537
Query 535 CTAAACCTAGTTGTCGTAATCCCATCATTTTGTATTGGTCCAATACTTAGTCCAAAACCT 594
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CTAAACCTAGTTGTCGTAATCCCATCATTTTGTATTGGTCCAATACCTAGTCCAAAACCC 597
Query 595 ACAAGCTCCCCTCTCATTTTTCTGTCCATTATCAAAGGGACTCGTGGAACGTACCCTAAC 654
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 ACAAGCTCCCCTCGAATTTTTCTGTCCATTATCAAAGGGACTCGTGGAGCGTACCCTAAT 657
Query 655 TTCAGGGGAGGGTTTGTGCACATAGACGATGTAGTTGCTGCACAAATCTTAGCAATGGAA 714
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 658 TTCAGGGGAGGTTTTGTGCACATAGAAGATGTAGTAGCTGCACAAATCTTAGCAATGGAA 717
Query 715 GAACCTAAAGCATCAGGAAGAATCTTATGTTCGAGTTCAGTGGCTCACTGGT 766
|| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 GATCCTAAAGCATCGGGAAGAATCTTATGTTCGAGTTCAGTGGCTCACTGGT 769
Score = 207 bits (112), Expect = 9e-53
Identities = 133/143 (93%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 822 GTGTGGCAGTGAAGAAGGGAAAGATATGCCTCATAGCTTAG-ACACAACAAAAATACATG 880
|||||| ||||||||||||| |||||||||||||||||| | |||||||||| |||||||
Sbjct 768 GTGTGGTAGTGAAGAAGGGAGAGATATGCCTCATAGCTT-GAACACAACAAAGATACATG 826
Query 881 AACTTGGCTTTGCCTCCTTCAAGTCATTAACAGAGATGTTTGATGACTGTATCAAGTGTT 940
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 827 AACTTGGCTTTGCCTCCTTCAAGTCATTACCAGAGATGTTTGATGACTGTATCAAGTGTT 886
Query 941 TTCAAGACAAGGGTTTGCTCTGA 963
| ||||||| |||| | ||||||
Sbjct 887 TCCAAGACATGGGTCTACTCTGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5