BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25472.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472824 jgi|Araly1|472824|fgenesh2_kg.1__2778__AT1G25470.1 1783 0.0
> Ahg472824 jgi|Araly1|472824|fgenesh2_kg.1__2778__AT1G25470.1
Length=1372
Score = 1783 bits (965), Expect = 0.0
Identities = 1222/1336 (91%), Gaps = 57/1336 (4%)
Strand=Plus/Plus
Query 27 AAGAACAGGAACAGTTAAAAGTCGGGATTTTTGGGTATT-TGAGAAGCAATC-G-GAACA 83
|||||||||||||| |||||||| |||||||||||| || ||||||||||| | |||||
Sbjct 1 AAGAACAGGAACAG-TAAAAGTC-GGATTTTTGGGT-TTCAGAGAAGCAATCGGAGAACA 57
Query 84 ACAACGGCGTTTGTAACGCGGA-TTTATGTCGGCTGTGTCTGAATCGGCTGCGATTTCGT 142
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 58 ACAACGGCGTTTGTAACGCGGATTTTATGTCGGCTGTGTCTGAATCGGCTGTGATTTCGT 117
Query 143 CTCTGTTTCTAATCTCCTTTGCAATTCAATCGTCTTCTTCTTCTTCCTCGTCTGTCTTGT 202
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 118 CTCTGTTTCTAATCTCCTTTGCAATTCAATCG------TCTTCTTCGTCGTCTGTCTTGT 171
Query 203 TCTTTGGTCTGAGTCTGACGGCTGTTCTTAACGCTCTTCGCTTCTGCTCCGAACAGAGGC 262
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 172 TCTTTGGTCTGAGTCTGACCGCTGTTCTTAACGCTCTTCGCTTCTGCTCGGAACAGAGGC 231
Query 263 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGACTTAAAAGGACTTGTTCTGGTG 322
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 232 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGGCTAAAAAGGACTTGTTCTGGTG 291
Query 323 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAGTTCGCTGAA 382
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 292 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAG-T---T--- 344
Query 383 ACAGAGAAATCTTTTTCCTGaaaaaaaCCTCATCCGATTTAGCAGTTTTTGATCAGAGAT 442
| | ||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct 345 -C---G-----------CTG--AAACACCTCATCCGATTTAGCAG-TTTTGATCAGA-AG 385
Query 443 TTTTGAGTGGGGtttttttGGTGTGTTCTTGGTGTGTTTGAGAAGATATGAAGTCCTTTG 502
|||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 386 TTTTGAGT-GGG--TTTTTGCTGTGTTCTTGGTTTGTTTGAAAAGATATGAAGTCCTTTG 442
Query 503 TGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATG 562
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 443 TGAAACCTGAGAAAGACTCTTTGTTGAGAACAGTCCGTATTATTTTCACTGATCCTGATG 502
Query 563 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 562
Query 623 GTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 682
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 563 GTTTTGTCCATGAGATTACTTTCCTCTCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 622
Query 683 ATGCTGTCAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTA 742
||||| ||||||||||||||| | || ||| |||||||| |||||||||||||||||||
Sbjct 623 ATGCTATCAAAACCCCTAGAAAG-AA--TACCAGGCAGTTAAAGTATCCTGTGGGAGTTA 679
Query 743 GGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTCACTAAAACTAAGA 802
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 680 GGTCGAGGCCATCAGGCAAATTTGCTGCTGAGATTATGAACCCATTCACTAAAACTAAGA 739
Query 803 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 799
Query 863 TTGAGTATGATGCACTGGCTTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTAACAGTGA 922
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 800 TTGAGTATAATGCATTGGCCTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTATCAGTGA 859
Query 923 CTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATT 982
||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 860 CTAGCCAGTGCTTGCGTTCTCCTGCTTCTGCTTCTGTTTCTTGTGTCAGTGCTGATGATT 919
Query 983 TGTCTAAAGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCT-G-G-TGATTCAACCA 1039
|||||||||||||| || |||||||||||||||||||||||||| | | |||||||||||
Sbjct 920 TGTCTAAAGAAAAGTCGACTCTGAACAAAGATGTTGCTGCGTCTAGTGATGATTCAACCA 979
Query 1040 CCAAAGAAGTGTTCACTACTTTCGACTTTTCGGATGTGAAAATACCTGATCTGAGATTCT 1099
| ||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 980 --AG-GAAGTTTTCACCACTTTCGACTTTTCCGATCTGAAAATCCCTGATCTGAGATTCT 1036
Query 1100 TAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATT 1159
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1037 TAGCAGCAGAAGAGGATTCTATGATTTCTGATGCAAATGGTGCAGAGCTAGACTTTGATT 1096
Query 1160 GT-TTCCTTACTGAC---TCTAACATTCTGCTGGATGATTACTCATTGCTCGAAAATGAT 1215
|| ||| || ||| | | |||| ||||||||||||||||||| |||||||| |||| |
Sbjct 1097 GTATTCTTT-CTGCCGAGTGTAACCTTCTGCTGGATGATTACTCTTTGCTCGATAATGGT 1155
Query 1216 ATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACT 1275
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1156 TTCAACATCAGCGGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGCGATTTCACT 1215
Query 1276 GAAATGGAATTCCAGCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCG 1335
||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1216 GAAATGGAACGCGAGCTTGATGATTTCAAATTTGCCTATGCAGATCAACTGACAACACCG 1275
Query 1336 CCTCTCG-GTTTGGTT 1350
||||||| ||| ||||
Sbjct 1276 CCTCTCGAGTTCGGTT 1291
Score = 106 bits (57), Expect = 6e-22
Identities = 71/77 (92%), Gaps = 4/77 (5%)
Strand=Plus/Plus
Query 1553 CTTCGTATCTCTTTTGTCTCTTGGTGTTGTACCTTTCTCTTTTAATGTTTGTCTAATCAG 1612
|||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||
Sbjct 1300 CTTCGTATCTCTTTTGTCTCTTCGTGTCGTAC-T--CTCTTTTAATGTT-GTCTAATCAG 1355
Query 1613 GACAGAAAATCTAAACC 1629
|||||||||||||||||
Sbjct 1356 GACAGAAAATCTAAACC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5