BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25480.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912460 jgi|Araly1|912460|Al_scaffold_0001_2714 2656 0.0
> Ahg912460 jgi|Araly1|912460|Al_scaffold_0001_2714
Length=1704
Score = 2656 bits (1438), Expect = 0.0
Identities = 1572/1639 (96%), Gaps = 0/1639 (0%)
Strand=Plus/Plus
Query 3 ATGGCTGACCAAACTAGAGAAGCCTTTCTCTCTCGAAAAGCTTGCTCAGATTTCGGATTC 62
|||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1 ATGGCTGACCAAACCAGAGAAGCCCTTCTCTCTGGAAAAGGTTGCTCAGATTTCGGATTC 60
Query 63 AATGATTCAAACATCATCGATGACCGTCGTTCCAAGTTCCGGTGTTTCCGATTTTGCTCC 122
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AATGATTCAAGCATCATCGATGACCGTCGTTCCAAGTTCCGTTGTTTCCGATTTTGCTCC 120
Query 123 GACGGGATCACTGCTTCCTGGAAAGCTTTATACGACATCGGTGCTAAATTATACGAGATG 182
||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 GACGGGATCACCGCTTCCTGGAAAGCGTTATACGACATCGCCGCTAAATTATACGAGATG 180
Query 183 GGTCGTTCCGATCGTCGGAAAGTTTACTTCTCCGTTAAGATGGGGATGGCTCTCGCACTC 242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGTCGTTCCGATCGTCGGAAAGTTTACTTCTCCGTCAAGATGGGGATGGCTCTCGCACTC 240
Query 243 TGTTCTTTCGTCATCTACCTTAAAGAACCACTCCGTGACGCTAGCAAGTATGCTGTTTGG 302
|||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||
Sbjct 241 TGTTCTTTCGTCATCTACCTCAAAGAAACACTCCGTGACGCTAGCAAGTACGCCGTTTGG 300
Query 303 GCGATCCTTACTGTTGTCGTCGTCTTTGAGTATAGTATAGGAGCAACATTGGTCAAAGGA 362
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 301 GCGATCCTTACTGTTGTCGTCGTCTTCGAATATAGTATAGGAGCAACATTGGTCAAAGGA 360
Query 363 TTTAATAGAGCTATAGGAACACTCTCTGCTGGAGGACTTGCTCTTGGCATAGCTAGACTC 422
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCAATAGAGCTGTAGGAACACTCTCTGCTGGAGGACTTGCTCTTGGCATAGCTAGACTC 420
Query 423 TCTGTTTCAGCTGGAGAATTTGAAGAACTCATTATCATTATCAGTATTTTCATTGCAGGT 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGTTTCAGCTGGAGAATTCGAAGAACTCATTATCATTATCAGTATTTTCATTGCAGGT 480
Query 483 TTTTCTGCAAGTTATTTGAAACTATACCCGGCGATGAAGTCGTATGAATATGCATTCAGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTCTGCAAGTTATTTGAAACTATACCCGGCGATGAAGTCGTATGAATATGCATTCAGG 540
Query 543 GTGTTTTTGTTGACATACTGTATTGTTCTTGTGTCTGGAAACAACTCTAGAGAttttttt 602
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTTTTTGTTGACATACTGCATTGTTCTTGTGTCTGGAAACAACTCTAGAGATTTTTTT 600
Query 603 AGCACTGCTTATTATAGGTTTTTGCTTATCCTGGTTGGTGCTGGTATCTGTTTGGGTGTG 662
|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 601 TGCACTGCTTATTATAGGTTTTTGCTTATTCTGGTTGGTGCTGCTATCTCTTTGGGTGTG 660
Query 663 AACATATTTATACTTCCCATTTGGGCTGGAGAAGACCTCCATAAACTAGTTGTTAAGAAT 722
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AACATATTTATACTTCCCATTTGGGCTGGAGAAGACCTCCATAAACTAGTGGTTAAGAAT 720
Query 723 TTCAAAAGTGTGGCCAATTCACTTGAAGGATGTGTTAATGGGTACTTGCAATGTGTTGAA 782
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCAAGAGTGTGGCCAATTCCCTTGAAGGATGTGTTAATGGGTACTTGCAATGTGTTGAA 780
Query 783 TACGAGAGGATTCCTTCGAAGATTCTCACTTACCAAGCTTCGGATGATCCATTATACAGT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACGAGAGGATTCCTTCGAAGATTCTCACTTACCAAGCTTCGGATGATCCATTATACAGT 840
Query 843 GGATACAGGTCTGTAGTCCAATCTACGAGCCAAGAAGATTCTCTGCTTGATTTTGCAGTA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 GGATACAGGTCTGTAGTCCAATCTACGAGCCAAGAAGATTCTCTGCTTGATTTTGCAATA 900
Query 903 TGGGAGCCTCCACATGGACCATATAAGACTTTCCACCATCCATGGGCAAACTACGTCAAA 962
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 901 TGGGAGCCTCCACATGGACCATACAAGACTTTCCACCATCCATGGGCAAACTATGTCAAA 960
Query 963 CTTAGTGGCGCAGTAAGGCACTGCGCTTTCATGGTCATGGCAATGCATGGCTGCATTCTT 1022
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTAGTGGTGCGGTAAGGCATTGCGCTTTCATGGTCATGGCAATGCATGGCTGCATTCTT 1020
Query 1023 TCGGAAATTCAGGCAGCTCCAGAAAAAAGGCAGGCTTTTCGTCAAGAACTTCAAAGAGTT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TCGGAAATTCAGGCAGCTCCAGAAAAAAGGCAGGCTTTTCGTCAAGAACTTCAGAGAGTT 1080
Query 1083 GGAAACGAAGGAGCCAAAGTCTTGAGGTTGTTTGGAGAAAAGGTGGAGAAAATGGAGAAG 1142
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1081 GGAAATGAAGGAGCCAAAGTCTTGAGATTGTTTGGAGAAAAAGTGGAGAAAATGGAGAAA 1140
Query 1143 CTAAGCCCAGGGAACGTTCTCAAGGATGTTCAAAGAGCAGCAGAGGAACTACAGATGAAA 1202
||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1141 CTAAGCCCAGGAAACGTTCTCAATGAAGTTCAGCGAGCAGCAGAGGAACTACAGATGAAA 1200
Query 1203 ATAGACAGTAACTCCTTCCTACTTGTCAACTCAGAAAGCTGGGCTGCTATGAAAGAGAAA 1262
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATAGACACTAACTCCTTCCTTCTTGTCAACTCAGAAAGCTGGGCTGCTATGAAAGAGAAA 1260
Query 1263 GCCGAAGCTGAAGAAGCGCAACAAAACTATCACGAAGCCAAAGACGACGAGTCTAAAGTG 1322
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1261 GCCGAAGCTGAAGAAGCGCAACAAAACTATCACGAAGAAAAAGACGATGAGTCCAAAGTG 1320
Query 1323 ATTCAATCCCTCAGCCAGATATGGGACAATAACAACAACCCTCATCATCAGAATCAACAC 1382
|| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct 1321 ATCCAATCCCTCAGCCAGATGTGGGACAATAACAACAACCATCATCATCAGAATCCACAC 1380
Query 1383 GCTGGTAATGATTCTCAGCTATGGATATCAACAGAGAGTATGATGCTTAGGAACCGCGAA 1442
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1381 ACTGGTAATGATTCTCAGCTATGGATTTCAACAGAGAGTATGATGCTTAGGAACCGCGAA 1440
Query 1443 AACTGGCCAAGCGTCTCTTTCATAGGCGGTTCTATGATCAATGAGATAGAATCCAAAGTA 1502
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 1441 AACTGGCCAAGCGTCTCTTTTATAGGCGGTTCTATGATCAATGAGACAGAATCTAAAGTA 1500
Query 1503 TATGAAAGTGCGAGTTCTTTGTCGCTAGCTACATTTGCGTCTCTTTTGATCGAGTTTGTT 1562
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 CATGAAAGCGCGAGTTCTTTGTCGCTAGCCACATTTGCGTCTCTTTTGATCGAGTTTGTT 1560
Query 1563 GCAAGGCTCCAAAATATTGTTAACGCGTATGAGGAACTAAGCACTAAAGCCGATTTCAAA 1622
||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 1561 GCAAGGCTCCAGAATATTGTTAACGCGTTTGAGGAGCTAAGCACTAAAGCTGATTTCAAA 1620
Query 1623 GAACAAGTTAGCGAGACAC 1641
|||||||| ||||||||||
Sbjct 1621 GAACAAGTAAGCGAGACAC 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5