BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25510.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921665 jgi|Araly1|921665|scaffold_102946.1 2182 0.0
> Ahg921665 jgi|Araly1|921665|scaffold_102946.1
Length=1501
Score = 2182 bits (1181), Expect = 0.0
Identities = 1390/1491 (93%), Gaps = 13/1491 (1%)
Strand=Plus/Plus
Query 6 TAACGGTCGGAATCTAAAAAATG--T-CTCCTAACTACTCc-t--tcttcttcttcatct 59
|||||||||||| |||||||||| | ||||| ||| |||| | ||||||||||| |||
Sbjct 1 TAACGGTCGGAAACTAAAAAATGTCTCCTCCTCACTGCTCCTTCCTCTTCTTCTTCGTCT 60
Query 60 tcttcctcacttcacactcttctgttttctCCAGAATCTTACCAGAGACCTCCACAACCA 119
||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 61 TCTTCCTCACTTCACACTCTTTTGTTTTCTCCAGAATCTTACCAAAGACCTCTGTAACCA 120
Query 120 CTACCTCAATTCTCAATGTCGCTGACTCCATCCACAGAACCAAGTATACGTCGTCGTTTC 179
|||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||
Sbjct 121 CTACCTCAATTCTCAATGTCGCCGACTCCATTCACGGAACTAAGTATACGTCGTCGTTTC 180
Query 180 GGTTAAACCAGCAAGAAGAACAGACTCACTCTGC-TTCTTCTTCTTTCAGCTTGCAGCTT 238
| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 181 GATTAAACCAGCAAGAAGAACAGACTCACTCT-CGTTCTTCCTCTTTCAGCTTGCAGCTT 239
Query 239 CATTCACGAGTTTCCGTCCGAGGAACTGAACACTCAGACTATAAGTCACTCACACTAGCC 298
|||||||||||||||||||| ||||||||||||||||| || ||||| || |||||||||
Sbjct 240 CATTCACGAGTTTCCGTCCGTGGAACTGAACACTCAGATTACAAGTCTCTAACACTAGCC 299
Query 299 AGACTCAACCGTGACACAGCCCGAGTCAAATCTCTCATAACCCGTTTAGATCTAGCCATC 358
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 300 AGACTCAACCGTGACACAGCCCGAGTCAAGTCTCTCATAACTCGTTTAGATCTAGCCATC 359
Query 359 AACAACATATCCAAAGCAGATCTCAAACCCA-TCAGCACAATGTACAC--C-ACTGAGGA 414
||||||||||||||||| |||||| || ||| | | |||||||||||| | ||||||||
Sbjct 360 AACAACATATCCAAAGCGGATCTC-AAGCCAGTTACCACAATGTACACTACTACTGAGGA 418
Query 415 ACAAGATATCGAAGCTCCTTTAATCTCCGGCACGACTCAAGGAAGTGGCGAGTACTTCAC 474
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 GGAAGATATCGAAGCTCCTTTAATCTCCGGCACGACTCAAGGAAGCGGCGAGTACTTCAC 478
Query 475 ACGCGTCGGTATCGGAAAACCGGCGCGTGAAGTTTATATGGTTCTAGATACTGGAAGTGA 534
|||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 479 ACGCGTCGGTATCGGAAACCCGGCGCGTGAAGTCTACATGGTTCTCGATACTGGAAGTGA 538
Query 535 CGTGAACTGGCTACAATGTACTCCTTGCGCTGACTGTTACCACCAAACCGAACCAATCTT 594
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 CGTTAACTGGCTACAATGCACTCCTTGCGCTGATTGTTACCACCAAACCGAACCAATCTT 598
Query 595 CGAGCCATCGTCGTCTTCTTCTTACGAGCCTCTCTCTTGTGACACTCCACAGTGCAATGC 654
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 CGAGCCATCGTCGTCCTCTTCTTACGAGCCTCTCTCTTGTGACACTCCACAGTGTAATGC 658
Query 655 CCTTGAAGTCTCAGAATGTAGAAACGCCACGTGTCTTTACGAGGTTTCTTACGGTGATGG 714
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 659 CCTTGAAGTCTCAGAATGTAGAAACGCCACGTGTCTTTATGAGGTTTCCTACGGTGACGG 718
Query 715 TTCTTACACCGTTGGAGATTTCGCCACCGAGACTCTCACAATCGGCTCAACTCTAGTTCA 774
|||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 719 TTCTTACACCGTCGGAGATTTCGCCACCGAGACTCTTACAATCGGCTCAACTTTAGTCCA 778
Query 775 AAACGTCGCCGTTGGTTGTGGACACAGCAACGAAGGGTTGTTCGTCGGCGCCGCCGGTTT 834
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 779 AAACGTCGCCGTTGGATGTGGACACAGCAACGAAGGGTTGTTCGTTGGCGCAGCCGGTTT 838
Query 835 ACTTGGACTCGGCGGTGGTTTGTTAGCTCTTCCGTCGCAGCTCAACACGACGTCGTTCTC 894
||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||
Sbjct 839 GCTTGGACTCGGCGGTGGTTTGCTGGCTCTTCCGTCGCAGCTTAACACGACGTCGTTTTC 898
Query 895 GTACTGTCTCGTTGACCGTGACTCAGACTCGGCTTCGACCGTGGATTTCGGGACTTCTCT 954
|||||| || |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 899 GTACTGCCTTGTTGACCGTGACTCAGACTCGGCTTCAACCGTTGAGTTCGGGACTTCTCT 958
Query 955 TTCTCCTGACGCCGTCGTGGCTCCGTTGCTACGTAACCACCAGCTCGACACGTTTTACTA 1014
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCCTCCTGACGCCGTCGTAGCTCCGTTGCTACGTAACCACCAGCTCGACACGTTTTACTA 1018
Query 1015 CCTAGGCCTCACCGGAATAAGCGTCGGCGGCGAGTTGCTTCAGATTCCTCAGTCTTCTTT 1074
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1019 CCTAGGCCTCACCGGAATAAGCGTTGGCGGCGAGTTACTTCAGATTCCTCAGTCTTCTTT 1078
Query 1075 CGAGATGGACGAGTCAGGCAGCGGTGGGATCATCATCGACTCAGGAACCGCCGTGACTCG 1134
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1079 CGAGATGGACGAGTCAGGAAGCGGTGGAATCATCATCGATTCAGGAACCGCCGTGACTCG 1138
Query 1135 TCTCCAGACCGAAATCTATAACTCGCTTAGAGACTCGTTCGTGAAAGGAACGTTGGACTT 1194
||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 1139 TCTCCAGACCGGAATCTATAACTCTCTTAGAGACTCGTTCTTGAAAGGAACGTCGGACTT 1198
Query 1195 GGAAAAAGCAGCCGGGGTGGCGATGTTTGACACGTGTTATAACCTTTCGGCTAAGACGAC 1254
||||||||| ||||| ||||| ||||| || |||||||| || ||||| |||||||||||
Sbjct 1199 GGAAAAAGCTGCCGGAGTGGCCATGTTCGATACGTGTTACAATCTTTCTGCTAAGACGAC 1258
Query 1255 GGTAGAAGTCCCGACCGTGGCTTTTCATTTCCCCGGCGGGAAGATGTTGGCTTTGCCGGC 1314
| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1259 GATAGAAGTCCCGACGGTGGCTTTTCACTTCCCCGGCGGGAAGATGTTAGCTTTGCCGGC 1318
Query 1315 GAAGAACTACATGATTCCGGTTGACTCGGTGGGGACATTTTGTTTGGCATTTGCACCGAC 1374
|||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1319 GAAGAATTACATGATTCCGGTAGACTCGGTGGGGACTTTTTGTTTGGCGTTTGCACCGAC 1378
Query 1375 GGCGAGTTCACTAGCGATTATCGGAAACGTGCAGCAACAAGGGACACGTGTCACTTTCGA 1434
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 GGCGAGTTCGCTAGCGATCATCGGAAACGTGCAGCAACAAGGGACACGTGTCACGTTCGA 1438
Query 1435 TTTGGCAAATTCTCTCATTGGATTCTCGTCTAATAAATGCTAAGCTGTTTT 1485
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTTGGCAAATTCTCTCATTGGATTCTCGTCTAATAAATGCTAAGCTGTTTT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5