BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25520.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335795 jgi|Araly1|335795|fgenesh1_pg.C_scaffold_1002360 1153 0.0
> Ahg335795 jgi|Araly1|335795|fgenesh1_pg.C_scaffold_1002360
Length=693
Score = 1153 bits (624), Expect = 0.0
Identities = 666/687 (97%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 200 ATGAGCTCGGTTTTGCAGGGTTTTACGAAGTCACTTGCTATGACCTTTGTATCGGAGATT 259
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 ATGAGCTCGGTTTTACAGGGTTTTACGAAGTCACTCGCTATGACGTTTGTATCGGAGATT 60
Query 260 GGTGACAAGACGTTTTTCGCTGCAGCAATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 319
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGTGACAAGACGTTTTTCGCTGCAGCTATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 120
Query 320 TTGGCTGGTTGTTTATCGGCTCTGATTGTTATGACTATCCTCTCTGCTACTCTTGGATGG 379
|||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTGGCTGGTTGTCTATCTGCCCTGATTGTCATGACTATCCTCTCTGCTACTCTTGGATGG 180
Query 380 GCTGCTCCTAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTT 439
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGCTCCAAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTC 240
Query 440 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 300
Query 500 TTGGCTGAAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 559
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGCTGGAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 360
Query 560 GACAGTAGTAAGAGAGAAGATGAAAACAAAAAGCAGAATAGGGCGTTCCTCACGCAATTT 619
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GACAGTAGTAAGATTGAAGATGAAAACAAAAAGCAGAAAAGGGCGTTCCTCACGCAATTC 420
Query 620 TTCTCTCCAATTTTTCTCAAGGCTTTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 679
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCTCTCCAATTTTTCTTAAGGCATTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 480
Query 680 AGTCAGCTTGCTACAATTGGTTTAGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 739
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTCAGCTTGCTACAATTGGTTTGGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 540
Query 740 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCG 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCA 600
Query 800 TCTCAAATTTCCGAAAGAATAGTGGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 859
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCAAATATCCGAAAGAATAGTTGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 660
Query 860 ATCCAATCGTATCTTACTTCTGTTGAG 886
|||||||||||||||||||||||||||
Sbjct 661 ATCCAATCGTATCTTACTTCTGTTGAG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5