BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25530.1
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472817 jgi|Araly1|472817|fgenesh2_kg.1__2771__AT1G25530.1 2337 0.0
> Ahg472817 jgi|Araly1|472817|fgenesh2_kg.1__2771__AT1G25530.1
Length=1496
Score = 2337 bits (1265), Expect = 0.0
Identities = 1426/1503 (95%), Gaps = 13/1503 (1%)
Strand=Plus/Plus
Query 1 TGAGATTGTCTCACTACACTTGCAAAAAAGACACGCAATGGTCTCTAGTTCTCCGGTTTC 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 TGAGATTGTCTCACTACACTTGCAAAAAAGACACACAATGGTCTCTACTTCTCCGGTTTC 60
Query 61 TCCGTCTAAGGAAACTGACCGGAAGTCCGGCGAGAAATGGACGGCGGAAGATCCATCACG 120
||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 61 TCCGTCTAAGGAAACTGACCGGAAGACCGGTGAGAAATGGACGGCGGGGGATCCATCACG 120
Query 121 GCCAGCCAAGTGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATTGGCGCGGGAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 121 GCCAGCCAAGTGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATCGGTGCCGGAGT 180
Query 181 CCTCAGCCTTCCTTATGCCATGGCTTACCTTGGCTGGGGACCAGGGACCTTTGTGTTGGC 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCAGCCTCCCTTATGCCATGGCTTACCTTGGCTGGGGACCAGGGACCTTTGTGTTGGT 240
Query 241 AATGACGTGGGGACTGACCCTAAACACTATGTGGCAAATGGTGCAGCTCCATGAGTGTGT 300
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 241 AATGACATGGGGACTGACCCTAAACACTATGTGGCAAATGGTGCAGCTTCATGAGTGCGT 300
Query 301 ACCGGGAACCCGGTTTGACCGGTATATCGATCTAGGCCGGTATGCTTTTGGCCCAAAACT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGGGAACTCGGTTTGACCGGTATATCGATCTAGGCCGGTATGCTTTTGGCCCAAAACT 360
Query 361 TGGCCCATGGATCGTCCTCCCTCAACAGCTAATCGTCCAGGTCGGCTGCAACATCGTTTA 420
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 361 TGGCCCATGGATCGTCCTCCCTCAGCAGCTCATCGTCCAGGTTGGCTGCAACATCGTTTA 420
Query 421 CATGGTGACAGGAGGCAAGTGCTTGAAGCAGTTCGTGGAGATCACTTGTTCCACCTGTAC 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 CATGGTGACAGGAGGCAAGTGCTTGAAGCAGTTCGTGGAGATCACTTGCTCCACCTGTAG 480
Query 481 ACCGGTACGACAGTCGTACTGGATCCTCGGCTTCGGTGGAGTCCA-TTTCATTCTCTCCC 539
||||| |||||||||||||||||||||| ||||||||||||||| ||| || |||||||
Sbjct 481 GCCGGTCCGACAGTCGTACTGGATCCTCGCCTTCGGTGGAGTCCACTTT-ATCCTCTCCC 539
Query 540 AGCTCCCTAACTTCAACTCCGTTGCCGGAGTCTCCCTGGCTGCCGCCGTCATGTCTCTCT 599
||||||||||||||||||| || |||||||||||| |||| || ||| ||||||| ||||
Sbjct 540 AGCTCCCTAACTTCAACTCGGTCGCCGGAGTCTCCTTGGCCGCAGCCATCATGTCCCTCT 599
Query 600 GCTACTCGACGATAGCTTGGGGAGGAAGTATCGCACATGGAAGAGTGCCTGACGTGAGCT 659
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GCTACTCAACGATAGCTTGGGGAGGAAGTATCGCACATGGAAGAATGCCTGACGTGAGCT 659
Query 660 ATGATTACAAGGCGACGAATCCGGGTGACTTCACATTCCGAGTCTTTAATGCGTTAGGTC 719
| ||||||||||| |||||| || |||||||||| ||||||||||| |||||||||||||
Sbjct 660 ACGATTACAAGGCCACGAATGCGAGTGACTTCACGTTCCGAGTCTTCAATGCGTTAGGTC 719
Query 720 AGATCTCATTCGCTTTCGCTGGCCACGCTGTGGCTCTAGAGATTCAAGCCACGATGCCTT 779
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 720 AGATCTCATTCGCTTTCGCCGGCCACGCTGTGGCTCTAGAGATTCAAGCCACAATGCCTT 779
Query 780 CCACTCCTGAGAGACCATCCAAGGTGCCCATGTGGCAAGGAGTGATCGGAGCTTACGTGG 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 CCACTCCTGAGAGACCATCCAAGGTGCCCATGTGGCAAGGCGTGATCGGAGCTTACGTGG 839
Query 840 TCAACGCCGTTTGCTATTTTCCTGTGGCTCTGATATGCTATTGGGCCTTTGGTCAAGACG 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 TCAACGCCGTTTGCTATTTTCCTGTGGCTCTGATTTGCTATTGGGCCTTTGGTCAAGACG 899
Query 900 TGGACGACAATGTGCTGATGAATCTACAGAGACCAGCTTGGCTCATTGCTGCTGCTAATC 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 TGGACGACAATGTGCTGATGAATCTACAGAGACCAGCTTGGCTCATTGCTTCTGCTAATC 959
Query 960 TCATGGTTGTTGTCCATGTCATTGGTAGCTACCAAGTGTTTGCTATGCCTGTCTTTGATC 1019
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TCATGGTTGTTGTCCATGTCATCGGTAGCTACCAAGTGTTTGCTATGCCTGTCTTTGATC 1019
Query 1020 TTTTGGAGAGGATGATGGTTAACAAATTTGGTTTTAAGCATGGAGTTGTTCTGAGGTTTT 1079
|||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||
Sbjct 1020 TTTTGGAGAGGATGATGGTTTACAAATTCGGTTTTAAGCATGGCGTTGCTCTGAGGTTTT 1079
Query 1080 TCACTCGAACTATTTATGTCGCATTTACATTGTTCATTGGAGTGAGTTTCCCCTTCTTTG 1139
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1080 TCACTCGAACTATTTATGTCGCATTTACATTATTTATTGGAGTGAGTTTCCCCTTCTTTG 1139
Query 1140 GAGACCTTCTAGGCTTCTTTGGAGGATTTGGTTTTGCACCTACTTCTTTCTTCCTCCCAA 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGACCTTCTAGGGTTCTTTGGAGGATTTGGTTTTGCACCTACTTCTTTCTTCCTCCCAA 1199
Query 1200 GTATAATGTGGCTTATCATCAAGAAACCAAGGAGATTCAGCGTCACCTGGTTCGTCAATT 1259
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1200 GTATAATGTGGCTTATCATCAAGAAACCAAGGAGATTTAGCGTCACCTGGTTTGTCAATT 1259
Query 1260 GGATCTCCATTATCGTAGGAGTGTTCATAATGTTAGCGTCAACAATTGGAGGGTTGAGGA 1319
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1260 GGATCTCCATTATCGTTGGAGTGTTCATAATGCTGGCGTCAACAATTGGAGGGTTGAGGA 1319
Query 1320 ACATCATTGCAGATTCTTCTACTTATAGTTTCTACGCTTAATAT-TGAATAGATCT---T 1375
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1320 ACATCATCGCAGATTCTTCTACTTATAGTTTCTACGCTTAATATGT-AATAGATCTAGCT 1378
Query 1376 -GTACACTAAAGCATGAATCATTGGATCATCTAAATTAAAAAGTGTAGGAATAAATCATC 1434
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TGTACACTAAAGTATGAATCATTGGATCATCTAA-TTAAAAAGTGTAGGAATAAATCATC 1437
Query 1435 TAAATTAACTGATGGTCGGATCGAGTTAGAGAGTGATGTATAATGCTACTTGTTCAATAA 1494
||||| | ||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1438 TAAATGG--T--TGGTCAGATCGAGTTAGAGAGTGATGTAAAATGCTACTTATTCAATAA 1493
Query 1495 GAC 1497
|||
Sbjct 1494 GAC 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61591926165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5