BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25550.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 1107 0.0
Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 300 2e-80
Ahg950188 jgi|Araly1|950188|scaffold_802075.1 263 3e-69
Ahg947333 jgi|Araly1|947333|scaffold_703562.1 217 2e-55
Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 52.8 7e-06
> Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706
Length=1023
Score = 1107 bits (599), Expect = 0.0
Identities = 921/1064 (87%), Gaps = 72/1064 (7%)
Strand=Plus/Plus
Query 211 ATGATGATGTTCAAGAGCGGTGACAT---GGATTACACCCAGAAAATGAAGAGATGTCAC 267
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATGATGATGTTCAAGAGCGGTGACATGGAGGATCACACCCAGAAAATGAAGAGATGTCAC 60
Query 268 GAATATGTAGAAGCTCTAGAAGAAGAACaaaaaaaGATTCAAGTCTTTCAACGTGAGCTC 327
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GAATACGTAGAAGCTCTCGAAGAAGAACAAAAAAAGATTCAAGTCTTCCAACGTGAGCTC 120
Query 328 CCTTTATGTTTAGAACTTGTAACCCAAGCTATCGAGTCATGTCGGAAGGAGTTATCGGAA 387
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 121 CCTTTATGTTTAGAACTTGTAACCCAAGCTATTGAGTCATGTCGGAAGGAGCTATCGGGA 180
Query 388 TCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAAT---GC 444
|| || ||||||||||||||||| ||||| ||||||||| |||| |||||||| | ||
Sbjct 181 TCGTCGGAACATGTTGGCGGCCAATCAGAGTGTTCTGAGAGGACGACTAGTGAGTGCGGC 240
Query 445 GGCGGT-GC-----CGTGTTTGAAGAGTTTATGCCAATCAAGTGGAGTTCTGCTTCATCT 498
|||||| || |||||||||||||||||| || || |||||||||||| |||||||
Sbjct 241 GGCGGTGGCGGTGTCGTGTTTGAAGAGTTTATCCCGATTAAGTGGAGTTCTTCTTCATCC 300
Query 499 GATGAAACCGATAAAGATGAAGAAGCTGAGAAAACTGAGATGATGACCAATGAAAATAAC 558
|||||||||||||||||||||| | || | || | | ||||||
Sbjct 301 GATGAAACCGATAAAGATGAAG-A----AG----C--------TG----A-G--AATAAC 336
Query 559 GATGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAATTGTGGAACCAATCACCA 618
| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 337 GGTGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAACCAATCGCCA 396
Query 619 GATCCACAACCT----A--AT-A----A-T-A-AGAAA-CCGATGGTAATTGAAGTCAAA 663
|||||| ||||| | || | | | | | ||| ||| ||||| || ||||||
Sbjct 397 GATCCAAAACCTAAAGAGGATCATGTGACTAATAAAAAGACGAACGTAATCGAGGTCAAA 456
Query 664 CGCAGCGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAGGCTGCAGATTCTCAA 723
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 457 CGCAACGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAAGCTGCAGATTCTCAA 516
Query 724 CCACTTATTAAAGCAATTACTCCGACGTCGACGACGACAACTAGTTCCACGGCGGAAACC 783
|| |||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 517 CCGCTTA--AAA-CAATCACTCCGACGTCGACGACGACATCTAGTTCCACGGCGGAAACA 573
Query 784 GTCGGGGGTGGAAAA--GAGTTTGAGGAGCAGAAACAATCTCATTCGAATAGGAAGCAAA 841
||||| ||| |||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 574 GTCGGAGGT--AAAAGTGAGTTTGAGGATCAGAAACAATATCATTCGAATAGGAAGCAAA 631
Query 842 GACGTTGCTGGTCACCGGAGTTACACCGCAGATTCTTGCACGCGCTTCAACAACTTGGTG 901
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 632 GACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCACGCGCTTCAACAACTTGGTG 691
Query 902 GATCACATGTTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTA 961
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 692 GATCACATGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTCGATGGTTTAACTA 751
Query 962 ATGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTC 1021
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 752 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTC 811
Query 1022 CGGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCA 1081
||||| ||| | || |||||||||| ||||||||||||| || |||||| | ||||| |
Sbjct 812 CGGTAATAACAAACGCTGGTGAAAATACACAACAACGGCAATTCATGGTGGTCGAAGGAA 871
Query 1082 TTTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTGTGGCGACACAAC 1141
||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 872 TTTGGGTGCCGTCGCACGATACAACGAATAATAGAGTTTACGCTCCTGTGGCG------- 924
Query 1142 CGCCGCAATCTTCAACGTCGGGAGAGAGAAGCAATCGGGGTTGCAAATCTCCCG-CAACA 1200
| ||||||||| |||||||||||||||| | ||| |||||||||| || | |||||
Sbjct 925 -GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGCCGGCGTTGCAAATCGCC-GACAACA 981
Query 1201 TCTTCTACTACTacacacacaccacacCTTCTTCCTCTTTCATA 1244
|||||| | |||||||||||||||||| |||||||||||||||
Sbjct 982 TCTTCT--T-CTACACACACACCACACCGTCTTCCTCTTTCATA 1022
> Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929
Length=477
Score = 300 bits (162), Expect = 2e-80
Identities = 275/325 (85%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962
||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 132 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 191
Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 192 TGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTCC 251
Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082
|||||||| | |||||| |||||||||||||||| || || |||||| ||||||| ||
Sbjct 252 GGTAGTAACAAACGGTGGAGAAAATCCACAACAACTACAATTCATGGTGGTGGAAGGAAT 311
Query 1083 TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA 1140
|||||| | | || ||||||||||| ||||||||||||||||||| || |||||
Sbjct 312 TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------ 363
Query 1141 CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA 1198
| ||||||||| |||||||||||||||| | | ||| | |||||||| || | |||
Sbjct 364 --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA 418
Query 1199 CATCTTCTACTACTacacacacacc 1223
|||||||||| || |||| ||||||
Sbjct 419 CATCTTCTAC-AC-ACAC-CACACC 440
> Ahg950188 jgi|Araly1|950188|scaffold_802075.1
Length=523
Score = 263 bits (142), Expect = 3e-69
Identities = 313/387 (81%), Gaps = 46/387 (12%)
Strand=Plus/Plus
Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962
||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 164 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 223
Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022
||||||||||||||| ||||||| || |||||| ||||||||||||||||||||
Sbjct 224 TGACGAAGTTAAAAGCCATTTAC------AT--ATTGCACACAAGAAGACCAGCTACTCC 275
Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082
|||||||| | |||||| |||| ||||||||||| || || |||||| ||||||| ||
Sbjct 276 GGTAGTAACAAACGGTGGAGAAA-TCCACAACAACTACAATTCATGGTGGTGGAAGGAAT 334
Query 1083 TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA 1140
|||||| | | || ||||||||||| ||||||||||||||||||| || |||||
Sbjct 335 TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------ 386
Query 1141 CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA 1198
| ||||||||| |||||||||||||||| | | ||| | |||||||| || | |||
Sbjct 387 --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA 441
Query 1199 CATCTTCTACTACTacacacacaccacacCTTCTTCCTCTTTCATAAATATATAGTT-AC 1257
|||||||||| || |||| |||||| | |||||||| ||||| ||| ||| ||
Sbjct 442 CATCTTCTAC-AC-ACAC-CACACCG----T-CTTCCTCTATCATAGATA----GTTCAC 489
Query 1258 CGATTTGTATGAAAATTTGTTTTCTTC 1284
|||||||||||||||| |||||||||
Sbjct 490 -GATTTGTATGAAAATTGGTTTTCTTC 515
> Ahg947333 jgi|Araly1|947333|scaffold_703562.1
Length=383
Score = 217 bits (117), Expect = 2e-55
Identities = 197/232 (85%), Gaps = 19/232 (8%)
Strand=Plus/Plus
Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962
||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 164 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 223
Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022
||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 224 TGACGAAGTTAAAAGCCATTTAC--------AGATTGCACACAAGAAGACCAGCTACTCC 275
Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082
|||||||| | ||||||||||||| ||||||||||||| || |||||| ||||||| ||
Sbjct 276 GGTAGTAACAAACGGTGGTGAAAATACACAACAACGGCAATTCATGGTGGTGGAAGGAAT 335
Query 1083 TTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGC 1133
| | | || || ||||||||||| ||||||||||||||||||| || ||||
Sbjct 336 T-GTG--CCGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGC 383
> Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1
Length=1432
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 17 TTTAGGTACGCGACGGCCCGACCTCGAT 44
||||||||||||||||||||||||||||
Sbjct 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5