BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25580.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921658 jgi|Araly1|921658|scaffold_102939.1 2073 0.0
> Ahg921658 jgi|Araly1|921658|scaffold_102939.1
Length=1422
Score = 2073 bits (1122), Expect = 0.0
Identities = 1329/1424 (93%), Gaps = 34/1424 (2%)
Strand=Plus/Plus
Query 240 TCTTTTCTTCATCGAGCTCTAATGGCTGGGCGATCATGGCTGATCGATAGCAACCGGATT 299
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TCTTTACTTCATCGAGCTCTAATGGCTGGACGATCATGGCTGATCGATAGCAACCGGATT 60
Query 300 GCAACGAAGATTATGAGTGCATCGGCTAGTTCCGATCCTCGCCAAGTGGTGTGGAAGAGC 359
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 61 GCAACAAAGATTATGAGTGCATCGGCTAGTTCCGACCCGCGCCAAGTGGTGTGGAAGAGC 120
Query 360 AACCCGT-CAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATGTTGTTGA 418
|| || | |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 121 AATCC-TACAAGACATTGTCCCAACTGTCAACACGTCATTGACAACAGTGATGTTGTTGA 179
Query 419 TGATTGGCCAGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCTGAGATCATATG 478
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TGATTGGCCGGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCAGAGATCATATG 239
Query 479 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGCTCACACCCTTTCATTGATGAGTT 538
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 240 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGTTCCCACCCTTTCATTGATGAGTT 299
Query 539 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTACCAGG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTGCCAGG 359
Query 599 TGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 658
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTAAGAACGATGGAACGGTGTCCCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 419
Query 659 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 479
Query 719 GACAGGAAGAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAGATAAT 778
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 GACAGGAAAAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAAATTAT 539
Query 779 GGTTCTCTATGGCGGAAAAGCTGTGAAAACCAACTGGGTGATGCACCAATACCATTTGGG 838
||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 540 GGTTCTCTATGCCGGAAAAGCTGTGAAAACGAACTGGGTGATGCACCAATATCACTTGGG 599
Query 839 AATAGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATTTTCTACCAGCAGCC 898
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 AATTGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATATTCTACCAGCAGCC 659
Query 899 ACAACAGCTAGTAGTCAAGCGAGGTGATAAAGCTGAACAGGAAGTCTCTGAGGATATCTT 958
||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||
Sbjct 660 ACAGCAGCTAGTAGTCAAGCAAGGTGATAAAGTTGACCAGGATGTCTCTGAGGATATCTT 719
Query 959 TGCTGCAGTGACTCCAACAGCGGATCCTGTCACTCCAAAATTAGCTACACCTGAGCCTCG 1018
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TGCTGCAATGACTCCAAAAGCGGATCCTGTCACTCCAAAATTAGCCACACCTGAGCCTCG 779
Query 1019 AAATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCC-AGTG 1077
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 780 ACATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCCCA-TG 838
Query 1078 ACTATGTATCTGCCCATGAGGTTTCTCTTGCCGAGACATCCGAGGTAATGTGTATGGAAG 1137
|||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 839 ACTATGTAACTGCCCATGAGGTTTCTCTTGCCGAGACATCTGAGGTAATGTATATGGAAG 898
Query 1138 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACCAAGTTCTG-----G-GCCTGAGC 1191
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 899 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACTAAGTTCTGAATATGAGCCTGAGC 958
Query 1192 -TG-----GAGC---A-C--G-G-----ACTTGAAAACGGAGCAAAAGAAATGTTAGATG 1233
|| |||| | | | | ||||||||||||||||||||||||| ||||||
Sbjct 959 CTGATCCTGAGCCCGAGCCCGAGCCCGGACTTGAAAACGGAGCAAAAGAAATGATAGATG 1018
Query 1234 ATAAAGAGGAGCAAGAGAAGGATAGAGACAATGAAAACCAAGGTGAGGAAGATCCGACGT 1293
||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
Sbjct 1019 ATAAAGAGGAGCAAGAGAAGGATAGAGACGATGAAAACCAAGCTGAGGAAGAGCCGATTT 1078
Query 1294 GGTTTGACAGTGGATCTCAGTTTATCTTGAATTCGCAACAGCTTGTGGAAGCCTTGTCTC 1353
||||||||| || |||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 1079 GGTTTGACAATGAATCTCAGTTTGTCTTGAACTCACAACAGCTTGTGGAAGCCTTGTCTC 1138
Query 1354 TTTGCGACGATCTCTTG---G-G--ATCACAGGACAGGGAGGAAAACACAAACAGTGGAA 1407
||||||| ||||||||| | | ||||||||||||||| |||||||||||||||||||
Sbjct 1139 TTTGCGATGATCTCTTGCAAGTGGGATCACAGGACAGGGAAGAAAACACAAACAGTGGAA 1198
Query 1408 GCTTAAAGGATAAACAACCATGTATTGCGGATTACGCACACCTAGGACCAGAAGACTTCA 1467
|||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1199 GCTTAAAGAATAAACAACCATGTTTTGCGGATTACGCACAGCTAGGAACAGAAGACTTCA 1258
Query 1468 AACGTGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCTAACATAGAGCTTGATA 1527
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 AACGGGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCCAACATAGAGCTTGATA 1318
Query 1528 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCTT 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCGT 1378
Query 1588 GGGGGACTGGAAAGACTGATTGACTAAACAAAACTACCACGAGC 1631
|||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1379 GGGGCACTGGAAAGACTGACTGACTAAACAAAACTACCACGAGC 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5