BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25580.1 Length=1906 Score E Sequences producing significant alignments: (Bits) Value Ahg921658 jgi|Araly1|921658|scaffold_102939.1 2073 0.0 > Ahg921658 jgi|Araly1|921658|scaffold_102939.1 Length=1422 Score = 2073 bits (1122), Expect = 0.0 Identities = 1329/1424 (93%), Gaps = 34/1424 (2%) Strand=Plus/Plus Query 240 TCTTTTCTTCATCGAGCTCTAATGGCTGGGCGATCATGGCTGATCGATAGCAACCGGATT 299 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 TCTTTACTTCATCGAGCTCTAATGGCTGGACGATCATGGCTGATCGATAGCAACCGGATT 60 Query 300 GCAACGAAGATTATGAGTGCATCGGCTAGTTCCGATCCTCGCCAAGTGGTGTGGAAGAGC 359 ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 61 GCAACAAAGATTATGAGTGCATCGGCTAGTTCCGACCCGCGCCAAGTGGTGTGGAAGAGC 120 Query 360 AACCCGT-CAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATGTTGTTGA 418 || || | |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 121 AATCC-TACAAGACATTGTCCCAACTGTCAACACGTCATTGACAACAGTGATGTTGTTGA 179 Query 419 TGATTGGCCAGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCTGAGATCATATG 478 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 180 TGATTGGCCGGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCAGAGATCATATG 239 Query 479 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGCTCACACCCTTTCATTGATGAGTT 538 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 240 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGTTCCCACCCTTTCATTGATGAGTT 299 Query 539 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTACCAGG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 300 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTGCCAGG 359 Query 599 TGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 658 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 TGTTAAGAACGATGGAACGGTGTCCCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 419 Query 659 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 479 Query 719 GACAGGAAGAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAGATAAT 778 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 480 GACAGGAAAAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAAATTAT 539 Query 779 GGTTCTCTATGGCGGAAAAGCTGTGAAAACCAACTGGGTGATGCACCAATACCATTTGGG 838 ||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 540 GGTTCTCTATGCCGGAAAAGCTGTGAAAACGAACTGGGTGATGCACCAATATCACTTGGG 599 Query 839 AATAGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATTTTCTACCAGCAGCC 898 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 600 AATTGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATATTCTACCAGCAGCC 659 Query 899 ACAACAGCTAGTAGTCAAGCGAGGTGATAAAGCTGAACAGGAAGTCTCTGAGGATATCTT 958 ||| |||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| Sbjct 660 ACAGCAGCTAGTAGTCAAGCAAGGTGATAAAGTTGACCAGGATGTCTCTGAGGATATCTT 719 Query 959 TGCTGCAGTGACTCCAACAGCGGATCCTGTCACTCCAAAATTAGCTACACCTGAGCCTCG 1018 ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 720 TGCTGCAATGACTCCAAAAGCGGATCCTGTCACTCCAAAATTAGCCACACCTGAGCCTCG 779 Query 1019 AAATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCC-AGTG 1077 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 780 ACATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCCCA-TG 838 Query 1078 ACTATGTATCTGCCCATGAGGTTTCTCTTGCCGAGACATCCGAGGTAATGTGTATGGAAG 1137 |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 839 ACTATGTAACTGCCCATGAGGTTTCTCTTGCCGAGACATCTGAGGTAATGTATATGGAAG 898 Query 1138 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACCAAGTTCTG-----G-GCCTGAGC 1191 |||||||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 899 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACTAAGTTCTGAATATGAGCCTGAGC 958 Query 1192 -TG-----GAGC---A-C--G-G-----ACTTGAAAACGGAGCAAAAGAAATGTTAGATG 1233 || |||| | | | | ||||||||||||||||||||||||| |||||| Sbjct 959 CTGATCCTGAGCCCGAGCCCGAGCCCGGACTTGAAAACGGAGCAAAAGAAATGATAGATG 1018 Query 1234 ATAAAGAGGAGCAAGAGAAGGATAGAGACAATGAAAACCAAGGTGAGGAAGATCCGACGT 1293 ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| | Sbjct 1019 ATAAAGAGGAGCAAGAGAAGGATAGAGACGATGAAAACCAAGCTGAGGAAGAGCCGATTT 1078 Query 1294 GGTTTGACAGTGGATCTCAGTTTATCTTGAATTCGCAACAGCTTGTGGAAGCCTTGTCTC 1353 ||||||||| || |||||||||| ||||||| || ||||||||||||||||||||||||| Sbjct 1079 GGTTTGACAATGAATCTCAGTTTGTCTTGAACTCACAACAGCTTGTGGAAGCCTTGTCTC 1138 Query 1354 TTTGCGACGATCTCTTG---G-G--ATCACAGGACAGGGAGGAAAACACAAACAGTGGAA 1407 ||||||| ||||||||| | | ||||||||||||||| ||||||||||||||||||| Sbjct 1139 TTTGCGATGATCTCTTGCAAGTGGGATCACAGGACAGGGAAGAAAACACAAACAGTGGAA 1198 Query 1408 GCTTAAAGGATAAACAACCATGTATTGCGGATTACGCACACCTAGGACCAGAAGACTTCA 1467 |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||| Sbjct 1199 GCTTAAAGAATAAACAACCATGTTTTGCGGATTACGCACAGCTAGGAACAGAAGACTTCA 1258 Query 1468 AACGTGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCTAACATAGAGCTTGATA 1527 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1259 AACGGGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCCAACATAGAGCTTGATA 1318 Query 1528 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCTT 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1319 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCGT 1378 Query 1588 GGGGGACTGGAAAGACTGATTGACTAAACAAAACTACCACGAGC 1631 |||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1379 GGGGCACTGGAAAGACTGACTGACTAAACAAAACTACCACGAGC 1422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71609660600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5