BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25682.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912447 jgi|Araly1|912447|Al_scaffold_0001_2701 1498 0.0
> Ahg912447 jgi|Araly1|912447|Al_scaffold_0001_2701
Length=942
Score = 1498 bits (811), Expect = 0.0
Identities = 900/942 (96%), Gaps = 9/942 (1%)
Strand=Plus/Plus
Query 97 ATGTCGACTCTATCAGCTGCCAGGGCAGATAACTTTTACTATCCTCCAGAATGGACTCCG 156
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCGACTCTGTCAGCTGCCAGGGCGGATAACTTTTACTATCCCCCAGAATGGACTCCA 60
Query 157 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTCAGAGAGAGGGCAAAGAAA 216
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTGAGAGAGAGGGCAAAGAAA 120
Query 217 ATTGGCGAGGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 276
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGGCGAAGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 180
Query 277 TGTAGTTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGAAAAGAAGCAAGTTGGCAAC 336
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 TGCAATTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGAAAAAAAGCAAGTTGGGAAC 240
Query 337 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 300
Query 397 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTAATCACTAGTGGTGCCCAGAAGAAG 456
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTTATCACTAGTGGTGCCCAGAAGAAG 360
Query 457 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 420
Query 517 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAGAAG 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAAAAG 480
Query 577 AAAGCAGCTGAACCGCTTTTGGTCCGTCTTCAGCGAGTCTCAGATGCAAGACATGCTGAT 636
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AAAGCAGCAGAACCGCTTTTGGTCCGTCTCCAGCGAGTCTCAGATGCAAGACATGCTGAT 540
Query 637 GATTACTCCCTAAACAAAGCTCTACGTGCACAACTTAGGCGACACAGAAAACGTGTAGCA 696
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 541 GATTACTCCCTAAACAAAGCTCTGCGTGCACAACTTAGGGGACACAGAAAACGTGTAGCA 600
Query 697 GAGGAAGAGACTGCTTCAAGGAAGCTAGGCTTGGGGATAAGACTGCTTCCAAAGAGTGAA 756
|| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 601 GAAGAAGAGGCTGCTTCAAGGAAGTTAGGCTTGGGGATAAGACTTCTTCCAAAGAGTGAA 660
Query 757 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGAGCAAGTTTGATAAGAATCGAAAG 816
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGACCAAGTTTGATAAGAATCGAAAG 720
Query 817 GACAAACGAGCACTGATCCATGCATCTTCCATTTTTCCCGAGTCGTCTTACTC-AT--C- 872
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 721 GACAAACGAGCACTAATCCATGCATCTTCCATTTTTCCCGAGTCATCTTACTCGATGTCA 780
Query 873 -----GAGCAAGAAAAGAATGGAGCTGGAAGCAAAAAGAAGGAAAATAAGCGCAGCATCC 927
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 781 TCATCGAGCAAGAAAAGAATGGAGCTAGAAGCAAAGAGAAGGAAAATAAGTGCAGCATCG 840
Query 928 GCATCAAGCCTATTGAGAGGAGGATTCAAAGCTTCATCTTTATCTACAAACCCATCAGCA 987
||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 GCATCAAATCTGTTGAGAGGAGGATTCAAAGCTTCAGCTTTATCTACAAACCCATCAGCA 900
Query 988 AGCAAGCCCAAGGTTTCATCAGTTTCTGTAAGGAAACTCTAG 1029
|||||| ||||||||||||||||||||||||||||||| |||
Sbjct 901 AGCAAGTCCAAGGTTTCATCAGTTTCTGTAAGGAAACTGTAG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5