BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26100.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313371 jgi|Araly1|313371|fgenesh1_pm.C_scaffold_1002151 1147 0.0
Ahg472808 jgi|Araly1|472808|fgenesh2_kg.1__2762__AT1G26090.1 364 5e-100
> Ahg313371 jgi|Araly1|313371|fgenesh1_pm.C_scaffold_1002151
Length=711
Score = 1147 bits (621), Expect = 0.0
Identities = 681/711 (96%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGTAGATCCTTCAAGACTATCATTGGTCTTGTTTGCGAGACTGTCCGGTTTA 60
||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTGTGGATTCTTCAAGACTATCACTGGTCTTGTTTGCGAGACTGTCCGGTTTA 60
Query 61 GTAGTCGCAGTTTCGGTTCTGTACTGGGCTCTCTTCCTGCCTAATCTAGGACTCAGCTAC 120
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 61 GTAGTCGCAGTTTCGGTTCTGTACTGGGCTCTCTTCCTCCCTAATCAAGGCCTCAGCTAC 120
Query 121 TCTACTCTTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTACTCTTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATT 180
Query 181 CTGATACACAGATGGTTGCCTGGTTCAAGGAAAACAAAGAAAGCTGTTCATTTATGGCTA 240
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTGATACACAAATGGTTGCCTGGTTCAAGGAAAACGAAGAAAGCTGTTCATTTATGGCTA 240
Query 241 CAAGGAATGGCATTGGCCTCTGCAGTGTTTGGGATTTGGACAAAGTTCCATTACCAACGT 300
|||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 CAAGGAGTGGCATTGGCTTCTGCTGTGTTTGGAATTTGGACAAAGTTCCATTACCAACGT 300
Query 301 GGAGTTTTCGCCAATTTCTACAGTCTCCATTCTTGGATGGGTTTGCTCTCTGTTTCTCTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGTTTTCGCCAATTTCTACAGTCTCCATTCTTGGATGGGTTTACTCTCTGTTTCTCTC 360
Query 361 TTCGCTGCCCAGTGGGTGACTGGGTTCATGAGCTTCTGGCATAGAGGAGAAGTACGGACT 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TTCGCTGCCCAGTGGGTGACTGGGTTCATGAGTTTCTGGCATAGAGGAGAAGTACGGACA 420
Query 421 ACAAGAACCACGTTTCTTCCCTGGCATGTATTCCTCGGACTCTATACCTATGGTTTAGCC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGAACCACGTTTCTTCCTTGGCATGTATTCCTCGGACTCTATACCTATGGTTTAGCC 480
Query 481 ATTGCCACAGCTGAGACCGGACTGCTTGAGAAACTGACGTTCCTTCAGACCAAGAGGAAT 540
|||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 481 ATTGCCACCGCTGAGACCGGATTGCTTGAGAAACTGTCGTTTCTTCAGACCAAGAGGAAT 540
Query 541 GTCCCCAGACGCGGTTCTGAATCAATGACTGTCAATGGTTTAGGGCTTGGCTTGGCTCTA 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GTCCCCAGACGCGGTTCTGAATCAATGACTGTTAATGGTTTAGGGCTTGGCTTGGCTCTA 600
Query 601 CTCGGTTGCATTGTTATAACTGCTGCTATTTTGCCAAAGTATCAGAGCCATTCTCGTGAT 660
||| || | || ||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 601 CTCTGTGGTATCGTTATAACTGCTGCTGTTTTGCCAAAGTATCAGAGCCATTCTGGTAAT 660
Query 661 GAGAAACTCGTTTATTCATCTCAAGATCGTCCTAAATGTTTGTCTTCTTGA 711
|||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAGAAACTTGTTTATTCATCTCAAGATCGTCCCAAATGTTTGTCTTCTTGA 711
> Ahg472808 jgi|Araly1|472808|fgenesh2_kg.1__2762__AT1G26090.1
Length=1624
Score = 364 bits (197), Expect = 5e-100
Identities = 219/229 (96%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 659 ATGAGAAACTCGTTTATTCATCTCAAGATCGTCCTAAATGTTTGTCTTCTTGAGTTTTTA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 ATGAGAAACTCGTTTATTCATCTCAAGATCGTCCCAAATGTTTGTCTTCTTGAGTTTTTA 1565
Query 719 ATTTTCATTCTTTTTAGTTTGTATTGG-TTTGGGGACAAACTACACATCTCTGGTGTACA 777
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1564 ATCTTCATTCTTTTTAGTTTGTATTGGTTTTGGGGACAAACTACACATCTCTGGTGTACA 1505
Query 778 AAAAGAACAAATTAGTTCTTCGAAAATGTATTACCGCATTGTGACGATGAGACTTCTGTC 837
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1504 AAAAGAACAAATTAGTTCTTCGAAAATGTATCACCGCATTGTGATGATGAGACTTCTGTC 1445
Query 838 CACAAACTTTGCTCCTCCAACTTTTCCTTGAATCTGAG-ACGGTAAATG 885
|| |||||||||||| |||||||||||||||||||||| | || |||||
Sbjct 1444 CAGAAACTTTGCTCCACCAACTTTTCCTTGAATCTGAGGA-GGCAAATG 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5