BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26110.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472806 jgi|Araly1|472806|fgenesh2_kg.1__2760__AT1G26110.1 3445 0.0
> Ahg472806 jgi|Araly1|472806|fgenesh2_kg.1__2760__AT1G26110.1
Length=2250
Score = 3445 bits (1865), Expect = 0.0
Identities = 2165/2301 (94%), Gaps = 55/2301 (2%)
Strand=Plus/Plus
Query 4 GGAATGGATAATAAAAAAGAGATGCTCGATCTCCCCAAATTAGAGTAAACCCTAATTGTG 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAATGGATAATAAAAAAGAGATGCTCGATCTCCCCAAATTAGAGTAAACCCTAATTGT- 59
Query 64 TATCTGTAGCTTtctctctctctctctctctctctctcGCgaagaagaagaagaagaagG 123
| ||||||| || | |||||||||||||||||||| |||||||||||||||||
Sbjct 60 T-TCTGTAG------CT-T-TCTCTCTCTCTCTCTCTCGC---GAAGAAGAAGAAGAAGG 107
Query 124 AGATCAAGGAACTCGAAgtgtgtgtgtgtgtgtTTGCCTTCTCTTGTCTTTTAG-TTTTT 182
||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||
Sbjct 108 AGATCAAGGAACTCGAA----GTGTGTGTGTGTTTGCCTTCTCTTGACTTCTAGTTTTTT 163
Query 183 TCTCTCTTTGGCTGTGATTTCGTCGGCGAAGAGAGACATAGATCGGATATGGCGGCTGAT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TCTCTCTTTGGCTGTGATTTCGTCGGCGAAGAGAGACATAGATCGGATATGGCGGCTGAT 223
Query 243 AATACGGGTTCGAAATCGAGCTCCGCTGCGGATTCTTACGTTGGGAGCTTGATTAGTTTG 302
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AATACGGGTGCGAAATCCAGCTCCGCTGCGGATTCTTACGTTGGGAGCTTGATTAGTTTG 283
Query 303 ACATCTAAGAGTGAGATCAGATACGAAGGGATCCTTTACAATATTAATACAGATGAATCC 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ACATCTAAGAGCGAGATCAGATACGAAGGGATCCTTTACAATATTAATACAGATGAATCC 343
Query 363 AGTATCGGACTTCAAAACGTTCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGTATCGGACTTCAAAACGTTCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCG 403
Query 423 CAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAG 482
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 404 CAAGTTCCTCCTAGTGACAAAGTTTATGAGTACATATTGTTCCGTGGAACTGATATCAAG 463
Query 483 GATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATAAATAATGAC 542
||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 464 GATTTGCAAGTCAAAGCTTCTCCACCAGTCCAGCCTCCTCCACCTACTATAAATAATGAC 523
Query 543 CCTGCTATAATTCAGTCTCACTACCCTAGCCCGATGCCAACATCTGGTAGCTTGCCTTCT 602
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CCTGCTATAATTCAGTCCCACTACCCTAGCCCGATGCCAACATCTGGTAGCTTGCCTTCT 583
Query 603 ACTGCGAGCGGGTCACTACCTGACATTAGTTCTCATAATGGACAACCTGGACAACATGGA 662
||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 584 ACTGCGAGCGGGTCACTGCCTGACATTAGTTCTCATAATGGACAACCT-G-------GG- 634
Query 663 ATGGGATTTCAAAACGCAATGCCTTTGTATCAGCCTGGTGGAAATCTTGGTTCATGGGGA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 635 ATGGGATTTCAAAACGCAATGCCTTTGTATCAGCCTGGTGGAAATCTTGGTTCCTGGGGA 694
Query 723 GCGTCACCACAACCACCAATGTATTGGCAAGGTTTCTACACCCCACCTCCCAATGGCCTT 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GCTTCACCACAACCACCAATGTATTGGCAAGGTTTCTACACCCCACCTCCCAATGGCCTT 754
Query 783 CCCCAATTGCATCAGCAGTCTCTGATTCGACCCCCTCATGGGCTGCCAATGCCCAACTCT 842
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 755 CCCCAATTGCATCAACAGTCTCTGATTCGACCCCCTCATGGGCTGCCAATGCCCAATTCT 814
Query 843 CTTCAGCAACCCCTGCAATATCCTAACTTTAATACCCCTCCTCCACCTACTGGGTCATCA 902
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 815 CTTCAGCAACCCCTGCAATATCCTAACTTTAATA--CC-CCTCCACCTACTGGTTCATCA 871
Query 903 TCTTTGCAGGGGTCAAGCTTGCCAGAAGCACCCTCTTCATTGTTTCCTTTTAGTACCAGT 962
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 872 AATTTGCAGGGTTCAAGCTTGCCAGAAGCACCCTCTTCATTGTTTCCTTTTAGTACTAGC 931
Query 963 TCTCAAATGTTAGCTCCTAGTTCATTGCCTTTCCCTGGTCTACCACCTGTGACGCTCTCG 1022
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 932 TCTCAAATCCTAGCACCTAGTTCATTGCCTTTCCCTGGTCTACCACCTGTGACGTTGTCG 991
Query 1023 TCTAGCCTGCAGTCTACACTGCAATCAGCACCATCTCCTTCACTAGCTTCAGAGATGGCA 1082
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TCTAGCCTGCAATCTACACTGCAATCAGCACCATCTCCTTCACTAGCTTCAGAGATGGCA 1051
Query 1083 CCTCCGTTGCTGTCAAACAAAGCTCCTATTACTGCTCCTCCTACCCTACCTCAGGATACT 1142
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1052 CCTCCGTTGCTGTCAAACAAAGCTCCTATTACTGCGCCTCCTACCCTACCTCAGGATACT 1111
Query 1143 AATTTGCTTTCGTTTTCTCTATCTACTACGAGAGCCACAGAAGCAAGTACTGGC-CTTCC 1201
||||||||| | ||||||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 1112 AATTTGCTTCCCTTTTCTCTATCTACTGCGAGAGCCACAGAAGCAAGTGCTG-CTCTTCC 1170
Query 1202 ACTGTCTAACAAGCCTAGTGTAGTAACTGGTCCAATTTCTCCGCCGCAGACAACACCATT 1261
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1171 ACTGTCTAACAAGCCTAGTGTAGTTACTGGTCCAATTTCTCTGCCGCAGACAACACCATT 1230
Query 1262 AACATCTGCTCCTGTTGCGGGAGTTTCTAGTTCCATTAGCCAAGATAAGCCAAAACCTTT 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GACATCTGCTCCTGTTGCGGGAGTTTCTAGTTCCATTAGCCAAGATAAGCCAAAACCTTT 1290
Query 1322 GTTGGTTACTCCTGGTCAACTGCTGCAGTCTGGATCTTCTGCAGTCTCTTTGTCCCCACC 1381
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 GTTGGTTACTCCTGGCCAACTGCTGCAGTCTGGATCTTCTGCAGTCTCTTTGTCCCCACC 1350
Query 1382 CTCGACAAATGCTGATAAAGATGTTGAGGTGGTTCAAGTATCGTCATCAGCTGGGTTGGA 1441
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 1351 CTCTACAAATGCGGATAAAGATGTTGAGGTCGTTCAAGTATCATCATCAGCTGCGTTGGA 1410
Query 1442 ACAATCTGTTCCAGTTACATCCGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGC 1501
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1411 ACAATCTGTTCCAGTTACATCTGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGC 1470
Query 1502 AAGACCAACTCAGAAGCCAAACGGGCATTCTTTCCCAAATCATAATGGTTACAGGGGACG 1561
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 AAGGCCAACTCAGAAGCCAAACGGGCATTCTTTCCCAAATCATAATGGTTACAGGGGACG 1530
Query 1562 TGGAAGAGGACGAGGAAGAGGAGCAGGGAGATCACACCAAGTAATGAAATTCACTGAAGA 1621
|||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1531 TGGAAGAGGAAGAGGAAGAGGAGCAGGGAGATCACACCAGGTAATGAAGTTCACTGAAGA 1590
Query 1622 TTTTGATTTCACAGCAATGAACGAAAAGTTCAATAAGGATGAAGTATGGGGTCATCTTGG 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TTTTGATTTCACAGCAATGAACGAAAAGTTCAATAAGGATGAAGTATGGGGTCATCTTGG 1650
Query 1682 GAAGAGTACTACCTTAGATGGTGATGAAGATGATGATTCCCCGACTGTAGATGAGGCTGA 1741
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1651 GAAGAGTACCACCTTAGATGGTGATGAAGATGATGATTCCCCAATTGTAGATGAGGCTGA 1710
Query 1742 GCTTCCTAAGATCGAGGCCAAACCTGTTTACAACAAAGATGACTTTTTCGATAGCCTATC 1801
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1711 GCTTCCTAAGATCGAGGCCAAACCTGTTTACAACAAAGACGACTTTTTCGATAGCCTCTC 1770
Query 1802 ATCAAACACCATTGACCGAGAGTCCCAAAATTCAAGGCCTAGGTTCTCAGAGCAACGGAA 1861
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1771 ATCAAACACCATTGACCGAGAGTCCCAAAATGCAAGGCCTAGGTTCTCAGAGCAACGGAA 1830
Query 1862 ACTAGATACTGAGACATTTGGTGAATTCTCGAGATTCCGAGGAGGTCGAGGAGGGCGTGG 1921
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1831 ACTAGATACTGAGACATTTGGTGAGTTCTCGAGATTCAGAGGAGGTCGAGGAGGGCGTGG 1890
Query 1922 TGGTTATGGACGAAACAACGGTTACTCACgtggtggttatggagggcgtggttatggcgg 1981
||||||||| |||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 1891 TGGTTATGGTCGAAAC---GGTTATTCACGTGGCGGTTATGGTGGGCGTGGGTATGGCGG 1947
Query 1982 ttatggtggccgtggcggcggcggcggtggctacgggtatggtggacgtggcCAGGGGAG 2041
|||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1948 TTATGGTGGCCGTGGCGGTGG------TGGCTATGGGTATGGTGGACGTGGCCAGGGGAG 2001
Query 2042 AGGCGTATCAAATCGTACTACCTAAA-CTGTTCTGCTAGAAAGGGCTCTAAAGACTCAAA 2100
||||||||||||||||||| |||||| | || |||| | |||||||| |||
Sbjct 2002 AGGCGTATCAAATCGTACTTCCTAAAACC-TTATGCT---------T-TAAAGACTTAAA 2050
Query 2101 ATCCAATGGGAGCTCA-GCTCTTGAGTGCTTTTGGTATGTGGCAATAAAACAAAAACCGA 2159
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 2051 ATCCAATGGGAGCTCATGCT-TTGAGTGCTTTTGGTATGTGGCAATAAAACAAAAAACTA 2109
Query 2160 GTCCCGTGTAATGTTTTCTGTTATAAAACCCCACTTGTGTGGTTTTGGAGTGTATTAATT 2219
||| | |||||||||||||||||||||||||| ||||||||||||| |||||||| | ||
Sbjct 2110 GTCTCATGTAATGTTTTCTGTTATAAAACCCCCCTTGTGTGGTTTTCGAGTGTATCATTT 2169
Query 2220 TGATTTCTGATCTTTGTTTTTAAGACTTGGTAATAGCGTCGTTCTTCTTATATCCAATGT 2279
||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2170 TGATTTCGGATCCTTGTTTTTAAGACTTGGTAATAGCGTCGTTCTTCTTATATTCAGTGT 2229
Query 2280 TATTTTGAACTTTTGTATACT 2300
|||||| |||||||||| |||
Sbjct 2230 TATTTTCAACTTTTGTAGACT 2250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5