BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26140.1

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg313365 jgi|Araly1|313365|fgenesh1_pm.C_scaffold_1002145           662    0.0  


> Ahg313365 jgi|Araly1|313365|fgenesh1_pm.C_scaffold_1002145
Length=486

 Score =  662 bits (358),  Expect = 0.0
 Identities = 452/495 (91%), Gaps = 15/495 (3%)
 Strand=Plus/Plus

Query  1    ATGCCGGTCCTCAGCTTCGTCTTGTCCGAATCTGTGGGTAAACATGATAG-GAAATGGGA  59
            |||||||||||||||||||||||||| |||||||||| |||||| || || |||||||||
Sbjct  1    ATGCCGGTCCTCAGCTTCGTCTTGTCTGAATCTGTGGATAAACAAGA-AGAGAAATGGGA  59

Query  60   CGAGCAAAATGTTGTGTTGGACACTGCA--CGTCCTCTATT-TCTTCCTGCTGTGATTTT  116
            |||| |||||||| ||| ||||||   |  ||   |||||| |||||||||     ||||
Sbjct  60   CGAGAAAAATGTTATGTCGGACAC-AAATGCGGATTCTATTATCTTCCTGC-----TTTT  113

Query  117  TGTGCATATCAGAGTAATGGAAGAAGATTGTGGTGCATTTGCAGCAGACTGTGTTGTCCT  176
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  TGTGCATATCACAGTAATGGAAGAAGATTGTGGTGCATTTGCAGCAGACTGTGTTGTCCT  173

Query  177  CTCATGTTGCTGCCAGTGCCTTGTCTTACAAGTCAGTGTCTTCATCTTCTTCAAGATCCC  236
             ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  174  GTCATGTTGCTGTCAATGCCTTGTCTTACAAGTCAGTGTCTTCGTCTTCTTCAAGATCCC  233

Query  237  TCGTAAACTTGCCAAGAAGATGAAGAAGTTTGTGAAGAGAATATGTGGAAAAACCTTGCA  296
            ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  234  TCGTAAAGTTGCCAAGAAGATGAAGAAGTTTGTGAAGAGAAGATGTGGAAAAACCTTGCA  293

Query  297  ACCAACAATGGAGGATGTCAAAGAGGAGCATTGGTCTGGAAATGGGTTTCCCTTTGAAGA  356
            ||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct  294  ACCAACAATGGAAAATGTCAAAGAGGAGCATTGGTCTGGGAATGGGTTTGCCTTTGAAGA  353

Query  357  AGGCTCATCAAGA-TCAATTTGCTTCGAAGATATTGATAG-AATGTTGCAGGAACTGTCC  414
             |||||||||||| | |||| || | ||||||||||| || ||||||| |||||||||||
Sbjct  354  TGGCTCATCAAGACTAAATT-GCATGGAAGATATTGA-AGGAATGTTGGAGGAACTGTCC  411

Query  415  ATGAACAAAGGGTTCTTGTTTGGAAGCTTCTGGCGCCATGAAGATTCTTCTGACATTTTC  474
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  412  ATGAACAAAGGGTTCTTGTTTGGAAGCTTCTGGCGTCATGAAGATTCTTCTGACATTTTC  471

Query  475  GATTTCAAATCATAA  489
            |||||||||||||||
Sbjct  472  GATTTCAAATCATAA  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17742348885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5