BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26150.1
Length=2866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472802 jgi|Araly1|472802|fgenesh2_kg.1__2756__AT1G26150.1 2669 0.0
Ahg926155 jgi|Araly1|926155|scaffold_201716.1 822 0.0
> Ahg472802 jgi|Araly1|472802|fgenesh2_kg.1__2756__AT1G26150.1
Length=2704
Score = 2669 bits (1445), Expect = 0.0
Identities = 1896/2102 (90%), Gaps = 77/2102 (4%)
Strand=Plus/Plus
Query 668 CCTCCTCCGACGACGATTCCAGTATC-T--CCTCCACCAGAACCTTCTCCCCCACCACCT 724
|||||||| || || ||||||||| | || ||||||||||||||||||||||||||
Sbjct 568 CCTCCTCCTCCGGTGACTCCAGTATCATCACCACCACCAGAACCTTCTCCCCCACCACCG 627
Query 725 TTACCAACTGAAGCTCCTCCTCCAGCGAATCCAGTATCATCACCTCCACCAGAATCTTCT 784
|||||||| |||||||||||| |||| || |||||||| || ||||||||| |||||
Sbjct 628 ACACCAACTGGAGCTCCTCCTCCGGCGATTCTTGTATCATCTCCACCACCAGAACCTTCT 687
Query 785 CCCCCGCCACCTCCACCAACTGAAGCTCCTCCTACTACTCCTATTACATCACCCAGCCCG 844
|||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||
Sbjct 688 CCCCCGCCACCTCCACCAACAGAAGCTCCT-C--CTACTCCTACTACATCACCCAGCCCG 744
Query 845 CCAACAAA---TCCACCACCACCAC-CG-GA----AAGCCCT-C-C-TTCACTACCTG-- 890
|||||||| ||||||||||||| | || |||| | | | ||| |||||
Sbjct 745 CCAACAAACCCACCACCACCACCACTTGAGACCTCTCCCCCTCCACGTCCACCACCTGAT 804
Query 891 C-ACCAGACC-CTCCA--A---GCAA-TCC-ACTTCCACCACCTAAG-T-TAGTCCCACC 939
| |||| || |||| | | || || ||| |||||||| | | || ||| ||
Sbjct 805 CAACCA-TCCGTTCCACCACCGGAAAGCCCTCCTT-CACCACCT--GCTCCAGACCCTCC 860
Query 940 ATCACATTCACCTCCACGTCATTTACCTTCCCCGCCAGCC-TCAGAAATTCCTCCTCCTC 998
| | || ||||||||| || ||| || | ||| || |||| || || |||||
Sbjct 861 AAGAAATCCACCTCCAC--CACCTACATTTGAC-CCA-CCATCAG---TT-CT--TCCTC 910
Query 999 CACGTCATTTACCTTCCCCACCAGCCTCAGAACGTCCTTCAACTCCTC--CAT-C-AGA- 1053
|||| | || ||| |||||||| |||||| |||||| || |||| | ||| | | |
Sbjct 911 CACGCCGTTCCCCTCCCCCACCAACCTCAGTACGTCC-TC--CTCCACAACATCCAAAAC 967
Query 1054 TT-C--AGAACATCCTTCTCCTCCTCCTCCAGGGCATCCAAAACGTCGTG-AGC--AACC 1107
|| | |||| | ||| |||||||||| || ||| | | ||||||| || | |||
Sbjct 968 TTCCTGAGAA-A-CCTCCTCCTCCTCCACC-GGG--TTCTAAACGTCCTGCTCCTTCACC 1022
Query 1108 TCCTCCACC--G-GGTTCTAAACGTCC--TAC-TCCATCACCTCCTTCTCCAAGTGACTC 1161
|||| | || | | || |||||||| | | ||| |||||||||||||||||||||||
Sbjct 1023 TCCTTCTCCAAGTGACTCAAAACGTCCTGTGCATCCTTCACCTCCTTCTCCAAGTGACTC 1082
Query 1162 AAAACGTCCTGTGCATCCTTCACCTCCTTCTCCACCAGAGGAAACTCTCCCACCTCCCAA 1221
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAAACGTCCTGTGCATCCCTCACCTCCTTCTCCACCAGAGGAAACTCTCCCACCTCCCAA 1142
Query 1222 GCCAAGTCCAGATCCCTTACCTTCTAATTCGTCTTCACCACCAACATTGCTTCCACCATC 1281
||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |
Sbjct 1143 GCCAAGTCCAGATCCCTTACCTTCTAATTCGTCTTCATCACCAACATCGCCTCCACCACC 1202
Query 1282 GTCAGTTGTATCCCCGC-CTTCGCCTCCTCGAAA-ATCTGTGTCAGGTCCTGATAATCCA 1339
|||||||||||||||| || | |||||| ||| ||||||| |||||||||||||||||
Sbjct 1203 CTCAGTTGTATCCCCGCATTTAG-CTCCTC-AAATATCTGTGCCAGGTCCTGATAATCCA 1260
Query 1340 TCTCCAAACAACCCCACTCCTGTGACAGATAATTCCAGCAGTTCTGGTATTAGTATAGCG 1399
|||| ||||||||| |||||| ||||||| |||||||||| ||||||||||| || |||
Sbjct 1261 TCTCGAAACAACCCTACTCCTTTGACAGAAAATTCCAGCAATTCTGGTATTAATACAGCA 1320
Query 1400 GCTGTTGTGGGTGTAAGTATTGGAGTGGCCCTTGTGCTGCTTACTCTCATTGGAGTTGTT 1459
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||
Sbjct 1321 GCTGTTGTGGGTGTAAGTATTGGAGTGGCCCTAGTGCTGCTTAGTCTTATTGGAGTTATT 1380
Query 1460 GTCTGTTGCTTAAAGAAACGGAAAAAGAGGCTCTCAACCATTGGTGGTGGCTATGTTATG 1519
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTCTGGTGCTTAAAGAAACGAAAAAAGAGGCTCTCAACCATTGGTGGTGGCTATGTTATG 1440
Query 1520 CCAACACCTATGGAATCCTCCTCCCCAAGATCAGATTCAGCGCTTCTGAAGACGCAGTCA 1579
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCAACACCTATGGATTCCTCCTCCCCAAGATCAGATTCAGCGCTTCTGAAGACGCAGTCA 1500
Query 1580 TCCGCACCTCTAGTGGGAAATCGTTCTAGCAATCGTACATACTTATCACAATCAGAGCCT 1639
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1501 TCCGCACCTCTAGTGGGAAATCGTTCTAGCAATCGAACATACTTTTCACAATCAGAGCCT 1560
Query 1640 GGTGGTTTTGGTCAATCGAGGGAACTGTTCTCATATGAAGAACTTGTCATAGCAACAAAT 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GGTGGTTTTGGTCAATCGAGGGAACTGTTCTCATATGAAGAACTTGTCATAGCAACAAAT 1620
Query 1700 GGATTCTCTGATGAAAATCTCTTGGGTGAAGGTGGATTTGGTCGTGTGTATAAAGGAGTT 1759
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GGATTCTCAGATGAAAATCTATTGGGTGAAGGTGGATTTGGTCGTGTGTATAAAGGAGTC 1680
Query 1760 TTACCAGATGAAAGAGTGGTTGCTGTGAAACAATTAAAAATAGGTGGAGGACAAGGTGAC 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TTACCAGATGAAAGAGTGGTTGCTGTGAAACAATTAAAAATAGGTGGAGGACAAGGTGAC 1740
Query 1820 CGAGAGTTCAAAGCCGAGGTTGATACCATAAGCAGGGTACATCACCGGAATTTGCTTTCT 1879
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1741 CGAGAGTTCAAAGCCGAGGTTGAGACCATTAGCAGGGTACATCACCGGAATTTGCTTTCT 1800
Query 1880 ATGGTTGGATACTGCATTTCCGAGAACCGGAGATTGCTTATTTATGATTATGTCCCTAAC 1939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ATGGTTGGATACTGCATTTCCGAGAACCGGAGATTGCTTATTTATGATTATGTCCCTAAT 1860
Query 1940 AACAACCTTTACTTCCATCTTCACGCCGCAGGAACTCCGGGTCTAGACTGGGCAACACGT 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 AACAACCTTTACTTCCATCTTCACGCCGCAGGAACTCCGGGTCTAGACTGGGCAACACGT 1920
Query 2000 GTTAAAATTGCTGCTGGTGCGGCTCGTGGACTAGCTTATCTCCATGAAGATTGTCACCCT 2059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1921 GTTAAAATTGCTGCTGGTGCGGCTCGTGGACTAGCTTATCTCCATGAAGATTGTCATCCT 1980
Query 2060 CGTATCATACATAGGGACATCAAATCATCCAACATTCTCTTAGAAAATAACTTCCATGCC 2119
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct 1981 CGTATCATACACAGGGACATTAAATCATCCAACATTCTCTTAGAGGATAACTTCCACGCT 2040
Query 2120 CTGGTTTCTGACTTCGGCCTTGCAAAGCTAGCTCTCGACTGTAACACACATATTACAACT 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CTGGTTTCTGACTTCGGCCTTGCAAAGCTAGCTCTCGACTGTAACACACATATTACAACT 2100
Query 2180 CGGGTCATGGGAACATTCGGCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACC 2239
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2101 CGGGTTATGGGAACATTCGGATACATGGCTCCTGAATATGCATCAAGTGGCAAATTAACC 2160
Query 2240 GAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG 2299
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2161 GAAAAATCAGACGTATTCTCCTTTGGCGTTGTTCTACTGGAGTTAATCACTGGACGTAAG 2220
Query 2300 CCTGTGGATGCATCCCAACCTCTGGGAGATGAGAGCCTTGTTGAATGGGCTCGTCCTTTG 2359
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CCCGTGGATACATCCCAACCTCTGGGAGATGAGAGCCTTGTTGAATGGGCTCGTCCTTTG 2280
Query 2360 CTTAGTAATGCCACTGAAACCGAAGAGTTTACAGCTTTAGCAGATCCCAAGCTAGGTAGA 2419
|||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2281 CTTAGTCATGCCATTGAAACCGAAGATTTTACAGCTTTGGCAGATCCCAAGCTAGGTAGA 2340
Query 2420 AACTATGTTGGTGTTGAAATGTTT-AGAATGATTGAAGCAGCGGCAGCTTGTATTCGCCA 2478
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2341 AACTATGTTGGTGTTGAAAT-TTTCAGAATGATTGAAGCAGCGGCAGCTTGTATTCGCCA 2399
Query 2479 TTCAGCTACAAAGAGACCCCGAATGAGTCAAATTGTGAGAGCTTTCGACAGTCTAGCTGA 2538
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 TTCAGCTGCAAAGAGACCTCGAATGAGTCAAATTGTGAGAGCTTTCGACAGTCTAGCTGA 2459
Query 2539 GGAAGACCTCACCAATGGAATGAGACTAGGCGAAAGCGAAATAATCAACTCAGCTCAACA 2598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2460 GGAAGACCTCACCAATGGAATGAGACTAGGCGAAAGCGAAATCATCAACTCAGCTCAGCA 2519
Query 2599 GTCTGCAGAAATCAGATTGTTTAGAAGAATGGCTTTTGGCAGCCAAAACTACAGTACAGA 2658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2520 GTCTGCAGAAATCAGATTGTTTAGAAGAATGGCTTTTGGTAGCCAAAACTACAGTACAGA 2579
Query 2659 TTCTTTAACTCGTAATAGTTATATAAGCAAAGATGAAAACTTGTAAATATGAGAAACAAA 2718
|||||| ||||||| |||| |||||||||||||||||||| ||| ||||| |||||||||
Sbjct 2580 TTCTTTCACTCGTATTAGTAATATAAGCAAAGATGAAAACGTGTGAATATCAGAAACAAA 2639
Query 2719 AC 2720
||
Sbjct 2640 AC 2641
Score = 634 bits (343), Expect = 1e-180
Identities = 827/1037 (80%), Gaps = 128/1037 (12%)
Strand=Plus/Plus
Query 4 TAATAGCTCACTGTAGAGTTGGGTTTTGACTAGCAGAGGAAATTTTTGGTGAAGTGTGTG 63
|||||||| |||||||| |||||||||||||||| |||| || ||| | || ||
Sbjct 1 TAATAGCTAACTGTAGACTTGGGTTTTGACTAGCGGAGG-AA-GTTT--T----TG-GT- 50
Query 64 GTCTCGAAGGAAAAGCTCTTTATACAGATCCGAACAAGTTTGCATTTTTGTCATCTAATC 123
||| | |||||||||||| |||| ||||||||||||||||||||||||| |||||| |||
Sbjct 51 GTC-C-AAGGAAAAGCTC-TTATTCAGATCCGAACAAGTTTGCATTTTTTTCATCTTATC 107
Query 124 AGATAATCTCGCTTATCTGGAATTTGCATTATTGGTGATCTGGGTTTTATCTGTTTAGTG 183
|| | | ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 108 AG--------G-TAATCTGGAATTTGCATAATTGGTGATCTGGGTTTTATC----T-GT- 152
Query 184 TTGAAGCCTGTTGTCCGAGTATTTAGGGTTCAAATTAT-AGTACAGTGTTGAGTGATGTG 242
|| | | ||| ||||||||||| |||| || | ||||||||||||||||||
Sbjct 153 TT--A----G-TGT-----TATTTAGGGTTGAAATAATAAAAACAGTGTTGAGTGATGTG 200
Query 243 TGGTTTTTAGTTGGTGCTTGGAGGTTACTGTCATACTCAAGTC-TGGGAAtttttgtttc 301
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 201 TGGTTTTTAGTTGGTGCTTGGAGGTTACTGTCATACTCAAGTCTTGGGAATTTTGGTTTC 260
Query 302 -t-tt-tttgtttAATAATTTCTCTTAGTAAAGTAAGTGACGGTGTTTGTTC-AATTTCA 357
| || ||| |||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 261 TTCTTCTTTTTTTAATAATTTCTCTTAGTAAAGTAAGTGACGCTGATTGTTCGAATTTCA 320
Query 358 GTTTTTGATCAGAAGAGTGTTGGTGAAGAAGATGTTAGAATCTGGTCTTGGGATTTAGAT 417
|||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 321 GTTTTTGATC-----A------CT-----AGA--CTAGAATCTGGTCTTGGGATTTAGAT 362
Query 418 GACTACACCTGCACAGGCTCCTAGGGAGGAGGTGTCACTGTCTCCATCATT-G------- 469
||||||||||||||||||||||| | |||||||||||||||||||| |||| |
Sbjct 363 GACTACACCTGCACAGGCTCCTACGCAGGAGGTGTCACTGTCTCCACCATTAGCATCCCC 422
Query 470 ---G-C---G--TC--C--CCTCCACTAATGGCGTTGCCTCCACCGCAGCCTTCGTTTCC 516
| | | || | ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 423 ACCGCCATTGTCTCAGCAGCCTCCACCAATGGCGTTGCCTCCACCGCAGCCTTCCTTTCC 482
Query 517 CGGTGATAATGCCACTTCCCCAACTAGAGAGCCCACTAATGGCAATCCACCAGAGACCAC 576
||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |
Sbjct 483 CGGTGATAATGCCACTTCCCCAACTAGAGAGCCCACTCATGGCAATCCACCGGATACCCC 542
Query 577 AAACACCCCAGCTCAGTCTTCTCCTCCTCCT-----GA-GACTCCACTATCATCACCACC 630
||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 543 AAACACCCCAGCTCAGTCTTCTCCTCCTCCTCCTCCGGTGACTCCAGTATCATCACCACC 602
Query 631 ACCAGAACCTTCTCCCCCATCACCTTCACTAACTGGACCTCCTCCGACGACGATTCCAGT 690
||||||||||||||||||| |||| ||| ||||||| ||||||| || |||||| ||
Sbjct 603 ACCAGAACCTTCTCCCCCACCACCGACACCAACTGGAGCTCCTCCTCCGGCGATTCTTGT 662
Query 691 ATC-TC-CT-CCACCAGAACCTTCTCCCCCACCACCTTTACCAACTGAAGCTCCTCCTCC 747
||| || | |||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 663 ATCATCTCCACCACCAGAACCTTCTCCCCCGCCACCTCCACCAACAGAAGCTCCTCCT-- 720
Query 748 AGCGAATCC-AGTATCATCACCTCCA-CCAGAATCTTCTCCCCCGCCACCTCCACCAACT 805
| | ||| | || ||||||| | | || | | | ||| ||||| |||||| ||
Sbjct 721 A-C---TCCTACTA-CATCACC-C-AGCCCGC--CAACAAACCCACCACCACCACCA-CT 770
Query 806 -GA-AGCTCCTCCTACTACTCCTATTACATC-ACCCAGCCCGC-CAACAAATCCACCACC 861
|| | ||| ||| | |||| | | || ||| | || | |||| | ||| ||
Sbjct 771 TGAGACCTC-TCCC-C--CTCC-A---CGTCCACC-A-CCTGATCAACCA-TCCGTT-CC 818
Query 862 ACCACCGGAAAGCCCTCCTTCACTACCTGCACCAGACCCTCCAAGCAATCCACTTCCACC 921
||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||
Sbjct 819 ACCACCGGAAAGCCCTCCTTCACCACCTGCTCCAGACCCTCCAAGAAATCCACCTCCACC 878
Query 922 ACCTA-AGTTAGTCCCACCATCACATTCA-CCTCCACGTCATTTACCTTCCCCGCCAGCC 979
||||| | || | |||||||||| ||| |||||||| | || ||| |||| ||| ||
Sbjct 879 ACCTACATTT-GACCCACCATCAG-TTCTTCCTCCACGCCGTTCCCCTCCCCCACCAACC 936
Query 980 TCAGAAATTCCTCCTCC 996
|||| | |||||||||
Sbjct 937 TCAGTACGTCCTCCTCC 953
Score = 158 bits (85), Expect = 3e-37
Identities = 116/130 (89%), Gaps = 6/130 (5%)
Strand=Plus/Plus
Query 1072 TCCTCCTCCAGGGCATCCAAAACGTCGTGAGCAA------CCTCCTCCACCGGGTTCTAA 1125
|||||||||| |||||||||| || |||| || ||||||||||||||||||||
Sbjct 945 TCCTCCTCCACAACATCCAAAACTTCCTGAGAAACCTCCTCCTCCTCCACCGGGTTCTAA 1004
Query 1126 ACGTCCTACTCCATCACCTCCTTCTCCAAGTGACTCAAAACGTCCTGTGCATCCTTCACC 1185
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ACGTCCTGCTCCTTCACCTCCTTCTCCAAGTGACTCAAAACGTCCTGTGCATCCTTCACC 1064
Query 1186 TCCTTCTCCA 1195
||||||||||
Sbjct 1065 TCCTTCTCCA 1074
> Ahg926155 jgi|Araly1|926155|scaffold_201716.1
Length=1492
Score = 822 bits (445), Expect = 0.0
Identities = 908/1128 (80%), Gaps = 46/1128 (4%)
Strand=Plus/Plus
Query 1399 GGCTGTTGTGGGTGTAAGTATTGG-AGTGGCCCTTGTGCTGCTT-ACTCTCATTGG-AGT 1455
||||||||| ||| | ||| ||| |||||| |||||| || || ||||| ||||| | |
Sbjct 353 GGCTGTTGTTGGTATCAGT-GTGGCAGTGGCACTTGTGGTG-TTCACTCTTATTGGTA-T 409
Query 1456 TGTTGTCTGTTGCTTAAAGAA-ACG-GAAAAAGAGGCTCTCAACCATTGGTGGTGGCTAT 1513
| ||||||| ||| | |||| ||| |||||| | || ||| | || |||||||| ||
Sbjct 410 TTTTGTCTGGTGCGT-GAGAAGACGAGAAAAA-CGACTTTCAGCTGTTAGTGGTGGCGAT 467
Query 1514 GTTATGCCAACACCTATGGAATCCTCCT-CCCCAAGATCAGATTCAGCGCTTCTGAAGAC 1572
|||| |||| | || || | | || || || |||||||||||||||| || | | ||
Sbjct 468 GTTACGCCATCGCCAAT-G-A-GCT-CTACCGCAAGATCAGATTCAGCTTTTTTTAGGAT 523
Query 1573 GCAGTCATCCGCACCTCTAGT-GG-G-AAATCGTTCTAGCA---ATCGTACATACTTATC 1626
||||||||| |||||| | || || | ||| ||||| ||| ||| ||||| || ||
Sbjct 524 GCAGTCATCTGCACCTGTTGTAGGAGAAAAGCGTTCGGGCAGTCATCAAACATATTTCTC 583
Query 1627 ACAATCAGAGCCTGGTGGTTTTGGTCAA-TCGAGGGAACTGTTCTCATATGAAGAACTTG 1685
||||||| | ||||||| || || ||| |||| | | |||| || || ||||||||||
Sbjct 584 ACAATCACAATCTGGTGGCTTAGG-CAATTCGAAAGCATTGTTTTCCTACGAAGAACTTG 642
Query 1686 TCATA-GCAACAAATGGATTCTCTGATGAAAATCTCTTGGGTGAAGGTGGATTTGGTCGT 1744
| | | ||||||||||| || || | |||||||| || |||||||| ||||||||| ||
Sbjct 643 TGA-AGGCAACAAATGGTTTTTCACAAGAAAATCTATTAGGTGAAGGAGGATTTGGTTGT 701
Query 1745 GTGTATAAA-GGAGTTTTACCAGATGAAAGAGTGGTTGCTGTGAAACAATTAAAAATAGG 1803
|| |||||| ||| | ||||| |||| ||||| |||||||| |||||| |||| || ||
Sbjct 702 GTATATAAAGGGA-TATTACCGGATGGGAGAGTAGTTGCTGTCAAACAACTAAAGATCGG 760
Query 1804 TGGAGGACAAGGTGACCGAGAGTTCAAAGCCGAGGTTGATAC-CATAAGCAGGGTACATC 1862
|||||||||||||||||| |||||||||||||| ||||| || | | || || | ||||
Sbjct 761 TGGAGGACAAGGTGACCGGGAGTTCAAAGCCGAAGTTGAAACTC-TTAGTAGAATTCATC 819
Query 1863 ACCGGAATTTGCTTTCTATGGTTGGATACTGCATTTC-CGAGAACCGGAGATTGCTTATT 1921
|||| ||||| |||| || || ||| | || || || | | |||| ||||| |||||
Sbjct 820 ACCGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTG-ACCGCAGATTACTTATC 878
Query 1922 TATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGCCGCAG-GAACTCCGGG 1980
|||||||||||| ||||||| ||||||||||||| ||||| | | || || | | |
Sbjct 879 TATGATTATGTCTCTAACAATGACCTTTACTTCCACCTTCATG--G-AGAAAAAT-CTGT 934
Query 1981 TCTAGACTGGGCAACACGTGTTAAAATTGCTGCTGGTGCGGCTCGTGGACTAGCTTATCT 2040
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 935 TCTGGACTGGGCAACACGTGTTAAAATTGCGGCTGGGGCGGCTCGTGGACTAGCTTATCT 994
Query 2041 CCATGAAGATTGTCACCCTCGTATCATACATAGGGACATCAAATCATCCAACATTCTCTT 2100
|||||||||||||||||| |||||||| || |||||||| || || || |||||||| ||
Sbjct 995 CCATGAAGATTGTCACCCGCGTATCATTCACAGGGACATTAAGTCGTCTAACATTCTTTT 1054
Query 2101 AGAAAATAACTTCCATGCCCTGGTTTCTGACTTCGGCCTTGCAAAGCT-AGCTCTCGACT 2159
||| | ||||| |||| | ||| |||||||| || ||||||| | | |||||| || |
Sbjct 1055 AGAGGACAACTTTGATGCTCGGGTCTCTGACTTTGGTCTTGCAA-GATTAGCTCTTGATT 1113
Query 2160 GTAACACACATATTACAACTCGGGTCATGGGAACATTCGGCTACATGGCTCCGGAATATG 2219
||||||| ||||| || || ||||| || ||||| || |||||||||||||| |||||||
Sbjct 1114 GTAACACTCATATCACCACACGGGTTATCGGAACGTTTGGCTACATGGCTCCTGAATATG 1173
Query 2220 CATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGG 2279
|||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| || |
Sbjct 1174 CATCAAGTGGAAAATTAACAGAGAAATCAGATGTATTCTCCTTTGGTGTTGTTCTGCTCG 1233
Query 2280 AGTTAATCACTGGACGTAAGCCTGTGGATGCATCCCAACCTCTGGGAGATGAGAGCCTTG 2339
||||||||||||||||||| || |||||| |||| ||||| |||||||| ||||||||||
Sbjct 1234 AGTTAATCACTGGACGTAAACCGGTGGATACATCGCAACCACTGGGAGACGAGAGCCTTG 1293
Query 2340 TTGAATGGGCTCGTCCTTTGCTTAGTAATGCCACT-GAAACCGAAGAGTTT-ACAGCTTT 2397
|||||||||| || ||| || | ||| |||||| | |||||||| || ||| | ||||
Sbjct 1294 TTGAATGGGCCCGGCCTCTGATAAGTCATGCCA-TAGAAACCGAGGAATTTGATT-CTTT 1351
Query 2398 AGCAGATCCCAAGCTAG-GTAGAAACTATGTTGG-TGTTGAAATGTTTAGAATGATTGAA 2455
||||||||||||||| | | |||||||||| | | | |||||||||||||||||||||
Sbjct 1352 AGCAGATCCCAAGCTTGCGG-GAAACTATGTCGAATCT-GAAATGTTTAGAATGATTGAA 1409
Query 2456 GCAGCGGCAGCTTGTATTCGCCATTCAGCTACAAAGAGACCCCGAATG 2503
||||||| ||| || | ||||||| |||||| |||||||| || |||
Sbjct 1410 GCAGCGGGAGCCTGCGTGCGCCATTTAGCTACCAAGAGACCTCGGATG 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108176295800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5