BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26160.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472801 jgi|Araly1|472801|fgenesh2_kg.1__2755__AT1G26160.1 1380 0.0
> Ahg472801 jgi|Araly1|472801|fgenesh2_kg.1__2755__AT1G26160.1
Length=1087
Score = 1380 bits (747), Expect = 0.0
Identities = 870/926 (94%), Gaps = 22/926 (2%)
Strand=Plus/Plus
Query 3 ttttttttGTT-TGCATAGAATCGA--GATCATCTATGGCGGTGATTAGTCCAGCTACAC 59
|||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTTT-TTCTGCATAGAATCAATCGATCATCTATGGCGGTGATTAGTCCAGCTACAC 59
Query 60 GTTTCGCACCGCCGCTGAACCGGCCTTTTCACCGCCGATCAAT-ACTTGCCTCGTTTCAT 118
||||||| ||||||||||||||||||||||||| |||||| | ||| | ||| |||||
Sbjct 60 GTTTCGCGCCGCCGCTGAACCGGCCTTTTCACCACCGATC-GTCACTAGTTTCGCTTCAT 118
Query 119 T-CTTCCTCTAGGAACTTCCTCTTCCTCGGAAAACCCACTCCGAGCTCGACGATCGTTTC 177
| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 119 TGC-TCCTCTAGGAACTTCCTCTTCCTCGGAAAACTCACTCCGAGCTCGACGATCGTCGC 177
Query 178 CGTCCGGTGCCAGAAACCTGTTTCCGACGGGGTTAGCTCTATGGAATCCATGAATCACGT 237
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 CGTCCGGTGCCAGAAACCTGTTTCCGACGGGATTAGCTCTATGGAATCCATGAATCA--- 234
Query 238 TGCATCTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGACAAC 297
|| | |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 TG--T-TTCA------TCTTCGATCGATTTCCTAACGTTGTGTCATCGGCTCAAGACAAC 285
Query 298 AAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATAT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATAT 345
Query 358 GTACCGTATGGCTCTAATGGCACTTATAGCTGGTGATCTTACTGGAGTTGACAGAGAAAG 417
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 346 GTACCGTATGGCTCTAATGGCACTTATTGCTGGTGATCTTACAGGAGTTGACAGAGAAAG 405
Query 418 GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGCTATTGTTGGAGATATTACCCC 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GTGTATCAAAATGGCAATTGTGCATGATATCGCTGAAGCTATTGTTGGAGATATTACCCC 465
Query 478 ATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAAT 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 466 ATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGAAAGCAGCTTTAAAAGAGAT 525
Query 538 GTGTGAGGTTCTTGGTGGAGGCCTCAGAGCGGAGGAGATCACAGAACTTTGGCTGGAGTA 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GTGTGAGGTTCTGGGTGGAGGCCTCAGAGCGGAGGAGATCACAGAACTTTGGCTGGAGTA 585
Query 598 TGAGAACAATGCTTCTTTAGAAGCAAATATTGTAAAAGACTTTGATAAGGTTGAGATGAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TGAGAACAATGCTTCTTTAGAAGCAAATATTGTAAAAGACTTTGATAAGGTTGAGATGAT 645
Query 658 TCTCCAGGCGCTAGAATATGAAGCTGAACACGGGAAAGTGCTCGACGAGTTTTTCATATC 717
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 646 TCTCCAGGCACTAGAATATGAAGCCGAACACGGGAAAGTGCTCGATGAGTTTTTCATATC 705
Query 718 AACAGCAGGCAAGTTTCAAACAGAAATTGGAAAAAGCTGGGCTGCTGAGATCAACGCTAG 777
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 706 AACAGCAGGCAAGTTTCAAACCGAAATTGGAAAGAGCTGGGCCGCTGAGATCAACGCTAG 765
Query 778 GAGAAAAAGCCAATTGACAAACAGGCAGAGATAGTAAAATCCAGTTGCATCATACCTTCA 837
||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 766 GAGAAAAAGCCAATTGATAAACAGACAGAGATAGTAAAGTCCAGTTGCCTCATACCTTCA 825
Query 838 ATCTTCCT-CAACTATCAACAGTAGAATCTCGGAAACTAAGCAGACTCCTCATGAACCAA 896
|| | ||| |||||||||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct 826 ATGT-CCTTCAACTATCAACACTAGAATCTTGGAAACTAAGCAGACTCCTCTTGAAACAA 884
Query 897 AAGGTACAAGCTTCTAGTGAAATTTT 922
||||||||||||||||||||||||||
Sbjct 885 AAGGTACAAGCTTCTAGTGAAATTTT 910
Score = 150 bits (81), Expect = 2e-35
Identities = 137/162 (85%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 956 tttttttAACTTCCCCTTTTGGTTACTAGTTGAAGTA-GA-AAATGCttttttttttGAG 1013
|||||||||||| ||||||||||| ||||| ||||| || ||| | ||||| ||||
Sbjct 908 TTTTTTTAACTT-CCCTTTTGGTTGCTAGTCAAAGTAGGACAAA-AC--TTTTTACTGAG 963
Query 1014 AAAAGT-GATCAAAGTTTCTTATGAAAATCTGAAGTTCGAGGTTCCTAATATGA-TTATG 1071
|||| ||||| |||||||||||||||||| || ||||||||||||||| | | || ||
Sbjct 964 GGAAGTGGATCATAGTTTCTTATGAAAATCTTAA-TTCGAGGTTCCTAATCT-ACTTCTG 1021
Query 1072 TTGTAG-TCACAACCCAATTGAAACATATCACACACTCTTGT 1112
||||| || ||||||||||||||||||||||||||||||||
Sbjct 1022 ATGTAGTTC-CAACCCAATTGAAACATATCACACACTCTTGT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5