BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26210.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472797 jgi|Araly1|472797|fgenesh2_kg.1__2751__AT1G26210.1 1772 0.0
> Ahg472797 jgi|Araly1|472797|fgenesh2_kg.1__2751__AT1G26210.1
Length=1062
Score = 1772 bits (959), Expect = 0.0
Identities = 1033/1068 (97%), Gaps = 8/1068 (1%)
Strand=Plus/Plus
Query 8 AAAATATTTGTTTAAAGAAAAGTATAGTTAGTTGATATTGAAAAAGAAGAGC-ATAGGCT 66
|||||||||||||||||||||||| | |||||| |||||||||||||||| | |||||||
Sbjct 1 AAAATATTTGTTTAAAGAAAAGTACATTTAGTTTATATTGAAAAAGAAGAACAATAGGCT 60
Query 67 TTTAATTCTATAAGAGAGTGTACTTTATAATGAAGGGAGGCACTAACCTTCCTTCCCTTG 126
|||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 TTTAATTCTATAAGAGAGAGTACTTTATAATGAA-GAAGGCACTAACCTTCCTTCCCTTG 119
Query 127 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 179
Query 187 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 239
Query 247 TCCGGCTTTTCTTGATACTTCAAAAAACACAAAAAGAAATTT-ATATTTATTGATGATGG 305
||||| ||||||||||||||| |||||||| ||||||||||| || |||||||||||| |
Sbjct 240 TCCGGTTTTTCTTGATACTTCTAAAAACAC-AAAAGAAATTTAAT-TTTATTGATGAT-G 296
Query 306 AAGAAGAGCAAAGCAAATGAGAGACAGAGACACAGACCCTATATCAGAGAGTAAATTGGT 365
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 297 --GAAGAGCAAAGCAAATGAGAGACAGAGACATAGATCCTATATCAGAGAGTATATTGGT 354
Query 366 GAAGTGGATTGGATCACATAAGCCATGGAGTCTCCGAGAAACCATGGAGGCTCTGAAGAG 425
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 GAAGTGGATTGAATCACATAAGCCATGGAGTCTCCGAGGAACCATGGAGGCTCTGAAGAG 414
Query 426 GAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGA 474
Query 486 AATGACCAATCATCTGTTGTTGTCgatgatgatgatgatgatacacaggttaaagaggct 545
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 475 AATGACCATTCATCTGTTGTTGTTGATGATGATGATGATGATACACAGGTAAAAGAGGCT 534
Query 546 gatgatggttatgagaacgatgatggcgatactagtgatgatggtggtgatgaagagagt 605
|||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 535 GATGATGGCTATGAGAACGATGATGGCCACAGTAGTGATGATGGTGGTGATGAAGAGAGT 594
Query 606 gatgatTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGCACATC 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 GATGATTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGAACATC 654
Query 666 AACAAACATGCAGCTAGGAAGAATGGTTCTAAACAAGTCTACCTTCAAAAACGCCAACAC 725
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 655 AACAAACATGCAGCTAGGAAGAATGGTACTAAACAAGTCTACCTTCAAAAACGCCAACAC 714
Query 726 ACAGAGAAAACAATCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA 785
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACAGAGAAAACATTCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA 774
Query 786 AGTGCAGCTAGTCGTGTCCAGAGTAGAGGGAAGGTGAGCAAAACCAAATAAAACTCATGG 845
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 AGTGCAGCTAGTCGTGTCCTGAGTAGAGGCAAGGTGAGCAAAACCAAATAAAACTCATGG 834
Query 846 CGAATGAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGA 905
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CGAATAAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGA 894
Query 906 CGTTTCAGGGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGTTTCAGGGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTG 954
Query 966 CATTGTTTTCTTTTGCCGGAATATGtttttttGTAGAAGCTGTCCCAAATAAGTTATCTG 1025
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 955 CATTGTTTTCTTTTGCCGGAATATGTTTTTTTGTAGAAGCTGTCCTAAATAAGTTATCTG 1014
Query 1026 CACGGTTCTCCGTTGGAACCCTGTTATATAATATGTACCTTGTTCTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CACGGTTCTCCGTTGGAACCCTGTTATATAATATGTACCTTGTTCTTC 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5