BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26218.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472794 jgi|Araly1|472794|fgenesh2_kg.1__2748__AT1G26218.1 1230 0.0
> Ahg472794 jgi|Araly1|472794|fgenesh2_kg.1__2748__AT1G26218.1
Length=1100
Score = 1230 bits (666), Expect = 0.0
Identities = 739/775 (95%), Gaps = 1/775 (0%)
Strand=Plus/Minus
Query 362 AGCTTGTACAAGAAAGTGTAGTTAAAGAGACATTGTAATCTGTGCATTTACGAAATTAAA 421
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 AGCTTGTACAACAAAGTGTAGTTAAAGAGACATTGTAATCTGTGAATTTACGAAATTAAA 716
Query 422 ATTTAT-AAAGTTTCAAACTTTTTATTTCTTGTTTCTCTGTTTGCGTATAAAAACCATTC 480
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTTATAAAAGTTTGGAACTTTTCATTTCTTGTTTCTCTGTTTGCGTATAAAAACCATTC 656
Query 481 CTTTGATCCCATCCGGGTCAGAGACGAACCCAAGCGGGCGATAAAACCCGAGAACTCGAG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 655 CTTTGATCCCATCCGGGTCAGAGACAAACCCAAGCGGGCGATAAAACCCGAGAACTCGAG 596
Query 541 GCTCTGAATACAGAGCAATGTTACAAATCCCTTTCACCTGTAAATCCTCAATCAACCGCT 600
|||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 595 GCTCCGAATACAGAGCGATGTTACAGATCCCTTTCACCTGCAAATCCTCAATCAACCGCT 536
Query 601 CCATCACCGCCTTCCCAAGTCCACAGCTTTGAAACGATGGATCAACCACAACATCCCATA 660
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 535 CCATCACCGCCTTCCCAAGTCCACAGCTTTGAAACGACGGATCAACCACCACATCCCATA 476
Query 661 TGATCGCATTGAAAACTCCGTCACCGGTTGCTCTCGCAAACGCTACAGGCCTCCGCGTTT 720
||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 475 TGATCGCATTGAATACTCCGTCACCGGTCGCTCTCGCAAACGCCACAGGCCGCCGCGTTT 416
Query 721 TCTCGTACTCTACCCAAAGCAACGCGTCTGTGTGCTGCAACGCCACCTCGATTTTCGCCG 780
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 415 TCTCGTACTCCACCCAAAGCAACGCGTCTGTGTGCTGCAACGCCACCTCGATCTTCGCCG 356
Query 781 TGTCACGACGAGGGAATCCCACGGCTGCAAAGACTGAATTCAGCTGGTCTAAGTTAAGTC 840
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 355 TGTCACGACGTGGGAATCCCACGGCTACAAAGACTGAATTCAGCTGATCTAAGTTAAGTC 296
Query 841 CTTCTGTTGTTCGACGGAGAAGAAAGCCTCTGGATTCGAGATCTTCGTCGCTGATTGAGT 900
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTTCTGCTGTTCTACGGAGAAGAAAGCCTCTGGATTCGAGATCTTCGTCGCTGATTGAGT 236
Query 901 AACTTGGTGGCTTTCGTTGCATTGCAGCTGGAAACGTCGCTTGTGATGATGATTGTGTGA 960
| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 235 AGCTTGGTGGCTTTCGTTGCGTTGCAGCTGGAAACGTAGCTTGTGATGATGATTGTGTGA 176
Query 961 CTGCGTTTTGTGGGTTTAATGTGGACCTTAACCGGAGAGAAGCTGGAGGAGTGGAGATTG 1020
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 175 CTGCGTTTTGCGGGTTTAATGTGGACCTTAACCGGATAGAAGCTGGAGGAGTGGAGATTG 116
Query 1021 TGCCTCCGAGAAACATGGTATACACTATTTTTTGTTCAAGTGTTGAATTTTAGGAGCTCG 1080
|||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 115 TGCCTCCGAGAAGCATGGTATACACTATTTCTTGTTAAAGTGTCGAATTTTAGGAGCTCA 56
Query 1081 ATTACATGGAATCAGACAAAAGGATGGTTTTTTAGTTTCCCTGAATTTGGATAAA 1135
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 55 ATTTCATGGAATCAGACAAAAGGATGGTTTTTTAGTTTCCCTGAATCTGGATAAA 1
Score = 501 bits (271), Expect = 4e-141
Identities = 314/333 (94%), Gaps = 9/333 (3%)
Strand=Plus/Minus
Query 1 CTCTGAAATTGCGCTAAATGTCATAAGCTCTGGTCATCTCATAAACGTGTCAATGCGTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1100 CTCTGAAATTGCGCTAAATGTCATAAGCTCTGGTCATCTCATAAACGTGTCAATGCGAGG 1041
Query 61 CTTCACTTCTTCTTCGAATCATTTG--TAAATTATCCCCAAAACACTAAATCTTACCATA 118
||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1040 CTTAACTTCTTCTTCGAATCATTTGTTTGAATTATCCCCAAAACACTAAATCTTACCGTA 981
Query 119 GCTGAGAAACAACGAAGAGATCGAAGAAAGCTAAGATGGTGCTGATGACGCTAATGGATC 178
||| | || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 980 GCT-----A-AA-GAAGAGATCGAAGAAAGCTAAGATGGTGCTGATGATGCTAATGGATC 928
Query 179 TGATCGTCGCCGGAATCTCTCTGATGGTCGGATTAGGGTTCTTCGCTCTCATCGCTTCCA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TGATCGTCGCCGGAATCTCTCTGATGGTCGGATTAGGGTTCTTCGCTCTCATCGCTTCCA 868
Query 239 TCCTCTGCTCCGTCGCCTTCTTCCACCATGCCAAAGCAGCTTCTTCTTGACCATCAAAAT 298
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 867 TCCTCTGTTCCGTTGCCTTCTTCCACCATGCCAAAGCCGCTTCTTCTTGACCATCAAAAT 808
Query 299 CAAAACCAAAACAGAGAATTGAACATGGAAGGA 331
||||| |||||||||||| ||||||||||||||
Sbjct 807 CAAAATCAAAACAGAGAACTGAACATGGAAGGA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5