BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26230.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921636 jgi|Araly1|921636|scaffold_102917.1 1362 0.0
Ahg949386 jgi|Araly1|949386|scaffold_801273.1 351 8e-96
> Ahg921636 jgi|Araly1|921636|scaffold_102917.1
Length=1660
Score = 1362 bits (737), Expect = 0.0
Identities = 889/958 (93%), Gaps = 28/958 (3%)
Strand=Plus/Plus
Query 16 CCTTGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTT 75
|||||||| |||||||||||||||| | | | || | ||||||||||||||| |||
Sbjct 1 CCTTGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CACTCTCTGCGTTGCCTTTTT 51
Query 76 CTGATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTT- 134
|||||||||||||||| |||||| | |||| | |||| |||||||| ||
Sbjct 52 CTGATCGAACTTTCCGTAAAAAG-------C--CTTC-T--TCTT---CGAATTTC-TTC 95
Query 135 CTGAGAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAG 194
|| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 96 CTTAGAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCGCTGTCACCAAG 155
Query 195 AAGCTTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAG 254
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 156 AAGCTTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAG 215
Query 255 GGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACGGTGAA 314
||||||||| | |||||||||||||||||||| ||||| | ||| |||||||| ||||||
Sbjct 216 GGACGAAACATAGTGTTGCAGAACAAGTACGGACCTCCCAAGATCGTCAATGATGGTGAA 275
Query 315 ACTGTTCTTAAAGAGATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTG 374
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 276 ACTGTTCTTAAAGAGATTGAATTGGAGGATCCTTTAGAGAATGTTGGAGTGAAACTTGTG 335
Query 375 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTATAATT 434
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 336 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGTGATGGTTCCACTACATCTATAATT 395
Query 435 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGATTTCTGCTGGAACAAATCCCATC 494
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 396 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGGTTTCTGCTGGAACAAATCCCATC 455
Query 495 CAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 554
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 456 CAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 515
Query 555 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGAC 614
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 516 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCCGGGAATGAC 575
Query 615 TACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 674
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TACGAAGTTGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 635
Query 675 ACAATAGAGAAAGGAAAATACCTTGTGAACAATCTCGAGATTGTGGAAGGAATGCAGTTT 734
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 636 ACAATAGAGAAAGGAAAATACCTAGTGAACAATCTTGAGATTGTCGAAGGAATGCAGTTT 695
Query 735 AATCGTGGCTACTTATCGCCATACTTTGTCACTGATCGAAGGAAGAGGGAAGCTGAATTC 794
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 696 AATCGTGGTTATTTATCGCCTTACTTTGTCACTGACCGAAGGAAGAGGGAAGCTGAATTC 755
Query 795 CATGATTGCAAGCTGCTTTTGGTAGATAAGAAAATAACAAATCCAAAAGATATGTTCAAG 854
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 756 CATGATTGCAAGCTGCTTTTGGTTGATAAGAAAATAACAAATCCAAAAGACATGTTCAAG 815
Query 855 ATATTGGATTCTGCTGTTAAAGAGGAATTTCCAGTTCTAATAGTTGCCGAAGATATTGAG 914
||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 816 ATATTGGATTCTGCTGTTAAAGAGGCCTTTCCAGTTCTTATAGTTGGCGAAGATATTGAG 875
Query 915 CAAGACGCTCTTGCTCCTGTTATTAGGAACAAACTAAAAGGTAACCTGAAG-GTGGCA 971
|||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||
Sbjct 876 CAAGACGCTCTTGCTCCTGTTATTAGGAACCAACTAAAAGGTAATCTGA-GCGTGGCA 932
Score = 1197 bits (648), Expect = 0.0
Identities = 688/708 (97%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 1167 AAAGCAGTCGACGAAAGGGTTTCGCAGATTAAAAATCTTATCGAGAACACCGAGGAGAAT 1226
||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 933 AAAGCAGTCGAGGAAAGGGTTTCTCAGATCAAAAATCTTATCCAGAACACCGAGGAGAAT 992
Query 1227 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1052
Query 1287 CAGGTAGGTGCACTGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1346
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CAGGTAGGTGCACAGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1112
Query 1347 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1172
Query 1407 TTGCGACTGGCTACAAAAGTGGACAGAATCAAAGAGACCCTTGACAACACAGAACAGAAG 1466
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1173 TTGCAACTGGCTACAAAAGTGGACAGAATTAAAGACACCCTTGACAACACAGAACAGAAG 1232
Query 1467 ATTGGAGCTGAAATCTTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1526
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 ATTGGAGCTGAAATATTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1292
Query 1527 GCAGACACAAATGGCAATATCGTCATAGAAAAGGTCTTATCGAACAAAAACACCATGTAC 1586
|||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1293 GCAGGCACAAATGGCAATATCGTCATAGAAAAGGTCTTATCCAACAAAAACGCCATGTAC 1352
Query 1587 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGTTGGCTGGTATAATTGATCCA 1646
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1353 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGCTGGCTGGTATAATCGATCCA 1412
Query 1647 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTTCATCAGTGGCTCAAACGTTTCTGACA 1706
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1413 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCAGTAGCTCAAACGTTTCTGACA 1472
Query 1707 TCGGATTGCGTTGTAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1766
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TCGGACTGCGTTATAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1532
Query 1767 TTACCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTACCAAGATTT 1826
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1533 TTGCCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTGCCAAGATTT 1592
Query 1827 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1874
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1640
> Ahg949386 jgi|Araly1|949386|scaffold_801273.1
Length=575
Score = 351 bits (190), Expect = 8e-96
Identities = 208/217 (96%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 351 GAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGT 410
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 271 GAGAATGTTGGCGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGT 330
Query 411 GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG 390
Query 471 ATTTCTGCTGGAACAAATCCCATCCAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCT 530
|||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 391 GTTTCTGCTGGAACAAATCCCATCCAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCT 450
Query 531 CTTGTTTTAGAGCTCAAGTCAATGTCCAGAGAGATTG 567
|||||||||||||||| ||||||||||||| | ||||
Sbjct 451 CTTGTTTTAGAGCTCAGGTCAATGTCCAGAAAAATTG 487
Score = 305 bits (165), Expect = 7e-82
Identities = 253/291 (87%), Gaps = 24/291 (8%)
Strand=Plus/Plus
Query 19 TGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTTCTG 78
||||| |||||||||||||||| | | | || ||||||||||||||||| ||||||
Sbjct 5 TGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CTCTCTCTGCGTTGCCTTTTTCTG 55
Query 79 ATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTTCTGA 138
||||||||||||| |||||| | |||||||||| || || | ||| |||
Sbjct 56 ATCGAACTTTCCGTAAAAAG-C--CTTCTTCTTC-GAAT-TT---C----TTCCTTC--- 100
Query 139 GAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC 198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC 160
Query 199 TTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGAC 258
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 161 TTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAGGGAC 220
Query 259 GAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACG 309
||||||| |||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 221 GAAACGTAGTGTTGCAGAACAAGTACGGACCTCCCAAGATTGTCAATGACG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5