BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26260.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3 1249 0.0
> Ahg472791 jgi|Araly1|472791|fgenesh2_kg.1__2745__AT1G26260.3
Length=1287
Score = 1249 bits (676), Expect = 0.0
Identities = 777/826 (94%), Gaps = 5/826 (1%)
Strand=Plus/Plus
Query 440 AGATTCAACTGGCTTGTTTCTTCAAGATACACA-GATTCCTAGTGGATCCAAACTAGATA 498
||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 168 AGAATCAGCTGGCTTGTTTCTTCAAGATACA-ATGATTCCTAGTGGATCCAAACTAGATA 226
Query 499 ATGGTCCTCTTACTGATGCATCTAAGTTAGTGAAAGAGAGATCGATTAATAATGTATCAG 558
||||| |||||| |||||||||||||| |||||||| ||||||| | |||||||||||
Sbjct 227 ATGGTTCTCTTAAGGATGCATCTAAGTTGGTGAAAGACAGATCGA-T--TAATGTATCAG 283
Query 559 AGGATTCTCAATCTAGTGGAGGTAATGGTCATGATGATGCTAAGTGTGGGCAAACATCTT 618
| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 284 ATGATTCTCAATCTAGTGGAGGTAATGGTCATGATGATGCTAAATGTGGGGTAACATCTT 343
Query 619 CCAAGGGGTTTAGTAGTaagaagaggaaaagaattgggaaggattgtgaagaagaagaag 678
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 344 CCAAGGGGTTTAACAGTAAGAAGAGGAAAAGAATTGGGAAGGATTGTGAAGGAGAAGAAG 403
Query 679 ataaaaagcaaaaggaTGAGCAAAGTCCAACTTCAAATGCGAACAAGACAAACAGTGAGA 738
|||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 404 ATAAAATGCAGAAGGATGAGCAAAGTCCAAATTCAAATGCTAACAAGACAAACAGTGAGA 463
Query 739 AGCAACCTTCTGATTCTTTAAAGGATGGGTATATTCACATGAGGGCACGAAGAGGCCAGG 798
| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 464 AACAAGCTTATGATTCTTTAAAGGATGGGTATATTCACATGAGGGCACGGAGAGGCCAGG 523
Query 799 CTACTAATAGTCACAGTCTTGCTGAAAGAGTAAGAAGAGAAAAAATCAGTGAAAGGATGA 858
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 524 CTACTAATAGTCACAGTCTTGCAGAAAGAGTAAGGAGAGAAAAAATCAGTGAAAGGATGA 583
Query 859 AGTTCTTGCAAGATCTTGTGCCAGGTTGCGACAAGGTGACTGGTAAGGCAGTTATGCTCG 918
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 584 AGTTCTTGCAAGATCTTGTACCGGGTTGCGACAAGGTGACTGGGAAGGCAGTTATGCTCG 643
Query 919 ATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGTTTTTATCGATGAAAC 978
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 644 ACGAAATCATTAACTATGTGCAATCACTTCAATGCCAGATCGAGTTTTTATCGATGAAAC 703
Query 979 TTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAGATGCTC 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAGATGCTC 763
Query 1039 TTCAATCATCTGCACCGACATTTCCCCACAACATGTCGATGCTTTATCCTCCTGTATCGT 1098
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 764 TTCAATCATCTGCACCGACATTTCCCCAAAACATGTCGATGCTTTATCCTCCTCTATCAT 823
Query 1099 ATCTCTCTCAAACAGGATTCATGCAACCGAACATTTCCTCAATGTCGCTATTGAGTGGAG 1158
||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||| |
Sbjct 824 ATCTCTCTCAAACAGGATTCATGGAACCCAACCGTTCCTCAATGTCGCTATTGAATGGGG 883
Query 1159 GATTAAAACGGCAGGAAACACATGGATATGAAAGTGATCACCACAATCTTGTCCACATGA 1218
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 884 GATTAAAACGGCAGGAAACACATGGATACGAAAGTGATCACCACAATGTTGTCCACATGA 943
Query 1219 ACCATGAAACCGGCACTGCACCTGATCATGAAGATACAACAGCTGA 1264
|||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 944 ACCATGAAACTGGCACTGCACCTGATCATGAAGACGCAACAGGTGA 989
Score = 291 bits (157), Expect = 1e-77
Identities = 163/166 (98%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 123 GACGAGTTTGCCGCAAAGAAGAAGGATTTGGTCAATACGCCAGTGGATTTGTATCCTCCG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GACGAGTTTGCCGCAAAGAAGAAGGATTTGGTCAATACGCCAGTGGATTTGTATCCTCCG 63
Query 183 GAGAATCCAATGTTGGGTCCTTCTCCGATGATGGATTCATTCAGAGAAACTCTTTGGCAT 242
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 64 GAGAATCCAATGTCGGGTCCTTCTCAGATGATGGATTCATTCAGAGAAACTCTTTGGCAT 123
Query 243 GATGGTGGTTTCAATGTCCACACAGATGCAGACACTTCCTTTAGAG 288
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 124 GATGGTGGTTTCAATGTCCACACAGATGCAGGCACTTCCTTTAGAG 169
Score = 243 bits (131), Expect = 4e-63
Identities = 196/224 (88%), Gaps = 18/224 (8%)
Strand=Plus/Plus
Query 1268 GAAGGTGGAGCCGTAGATGTTTCTTCTTCACTTTGTACTCAGCTTTAGCTGCTGATATAG 1327
||||||||||||||||||| ||||||||||||||||||| | | |||| ||
Sbjct 1045 GAAGGTGGAGCCGTAGATGGTTCTTCTTCACTTTGTACT---C---A---GCTG---TA- 1091
Query 1328 TGCGCCGCGGTCGAGAATTTTATTAACTTCGAACAGAAGAGTG-AAAACGAAACAGAGGA 1386
|| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||||
Sbjct 1092 ---GCTGCGGTCGAGAATTTTATTAACTTTGAACAGAAGAATGAAAAAC-AAACAGAGGA 1147
Query 1387 GGAAGCAGATTTTGTCTTTGAAATATTGACAGCTCCCGGAGAAAGAGTCGAGAGTAAGAA 1446
|||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1148 GGAAGCAGATCTTGTCTTTCTAATATTAACAGCTCCGGGAGAAAGAGTCGAGAGTAAGAA 1207
Query 1447 TCAACAATGTTGTGTAATGAATAGCTACTGTCTGCTTCTTTTGT 1490
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1208 TCAACAATGTTGTGTACTGAATAGCTACTGTCTGCTTCTTTTGT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5