BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26290.1

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490800 jgi|Araly1|490800|fgenesh2_kg.7__233__AT1G26290.1          854    0.0  


> Ahg490800 jgi|Araly1|490800|fgenesh2_kg.7__233__AT1G26290.1
Length=540

 Score =  854 bits (462),  Expect = 0.0
 Identities = 516/542 (95%), Gaps = 3/542 (1%)
 Strand=Plus/Plus

Query  68   ATGGACCACAAAGACTATAGCCGACAAAATGCGGAGAGGAGACTCTTATTGTCTAAAGAC  127
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct  1    ATGGACCACAAAGACTATAGCCGACAAAATGAGGAGAGGAGACTCTTATTGTCTAAAGAA  60

Query  128  GAAGAGAGGATCCGCGATGAGCTAGAAATGGAAATCGAAAGAAATTTGGAAGGGGAATTC  187
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGAGAGGATCCGCGATGAGCTTGAAATGGAAATCGAAAGAAATTTGGAAGGGGAATTC  120

Query  188  AAGGACGGGATCTACAATCTCGCACTCAAGCTGCGTCGACTTTATGAACAAAGACGAGAA  247
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  AAGGACGGGATCTACAATCTCGCACTCAAGCTGCGTCGACTTTATGAACAAAGACGGGAA  180

Query  248  AGAGAGGAGTTGTTCGATGTTTCAATGAGAAAGAGCAAGAGAGTATTGGAGGTGAACATA  307
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  181  AGAGAAGAGTTGTTCGATGTTTCAATGAGAAAGAGCAAGAGAGTACTGGAGGTGAACATA  240

Query  308  AATATAAAGATGGAAGGAGATACCAAGATTGAGATCACagagaagaagaaggaagtagac  367
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  241  AGTATAAAGATGGAAGGAGATACCAAGATTGAGATCACAGAGAGGAAGAAGGAGGTAGAC  300

Query  368  aacgaaaagacgaaaaaggcagagaattcggacaagagaaagaagTTTGTAGCAGTTGGT  427
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct  301  AACGAAAAGACGAAAAAGGCAGAGAATTCGGACAAGAGAAAGAAGTTTATACCAGCTGGT  360

Query  428  GAAGATAAAACAGGAAAAGAAAAGATGAAGAATCAAACGAGGGCTCATGAGCTCAGATGG  487
            ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct  361  GAAGATAAAACAGGAAAGGAAAAGATGAAGAATCAAACCAGAGCTCATGAACTCAGATGG  420

Query  488  AAATGGTAAAGAGAATGATTGGCCTGGATCTGTGCCTATATGCTGGTATCTATCTATGTT  547
            |||||||||||||| ||||| ||||| |||||||||||| |||||||||||| |||||||
Sbjct  421  AAATGGTAAAGAGATTGATTAGCCTGTATCTGTGCCTATTTGCTGGTATCTACCTATGTT  480

Query  548  TGCAC-TTTTTCTTCCTGCAAATCCTACTTAAACACGAATGAAATAAGAGTTATGCTTGC  606
            || || ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  481  TGAACCTTTTT-TTCCTGCAAATCCTATTTAAACAC-AATGAAATAAGAGTTATGCTTGC  538

Query  607  TT  608
            ||
Sbjct  539  TT  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22225660611


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5